Browse Element(s) Details


Os.22478.1.S1_at

Description gb:AK060539.1
DB_XREF= gi:32970557
TID=Os.22478.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22478 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0703B11.24 (P0703B11.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-E03, full insert sequence.
FL= gb:AK060539.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6065011/11non-green plastid inner envelope membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60610NANA1+35364534..35367750retrotransposon protein, putative, unclassified
LOC_Os01g60620NANA1+35368373..35374602retrotransposon protein, putative, unclassified
LOC_Os01g60630OsAffx.20484.2.S1_at1/111+35379667..35380435hypothetical protein
LOC_Os01g60640Os.30568.1.S1_at11/111+35389587..35391468WRKY DNA binding domain containing protein, expressed
LOC_Os01g60650Os.22478.1.S1_at11/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60650Os.22478.2.S1_x_at9/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60650Os.22478.2.S1_at7/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60660Os.14124.1.S2_at11/111+35396100..35401337tRNA binding domain containing protein, putative, expressed
LOC_Os01g60660Os.14124.1.S1_at10/111+35396100..35401337tRNA binding domain containing protein, putative, expressed
LOC_Os01g60670Os.32417.1.S1_at11/111+35408774..35412437Leucine Rich Repeat family protein, expressed
LOC_Os01g60680OsAffx.23875.1.S1_at11/111+35415750..35419969hypothetical protein
LOC_Os01g60680OsAffx.23875.2.S1_at10/111+35415750..35419969hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22478.1.S1_at--51--2251Chr01:35392894..35392917 (24 bp)
AAATATTTTCGTGGTCCTTCTCAGT
LOC_Os01g60650
Os.22478.1.S1_at--885--8351Chr01:35391907..35391931 (25 bp)
GGCGGTGACAGCCTTTTACACTCAT
LOC_Os01g60650
Os.22478.1.S1_at--397--7831Chr01:35391867..35391891 (25 bp)
GGTCACAAAGGTCCAAGCTCCGAGA
LOC_Os01g60650
Os.22478.1.S1_at--707--2971Chr01:35391653..35391674 (22 bp)
AATGGTTACACATCACCCTGGATGA
LOC_Os01g60650
Os.22478.1.S1_at--259--7871Chr01:35391606..35391630 (25 bp)
GGTTTGAAGATTGACTGGCCCATTT
LOC_Os01g60650
Os.22478.1.S1_at--503--3691Chr01:35391545..35391569 (25 bp)
CTAGTTTGTCTTTAGTCCCCAAGTG
LOC_Os01g60650
Os.22478.1.S1_at--495--9291Chr01:35391530..35391554 (25 bp)
TCCCCAAGTGGCTGTGGACTTTGAC
LOC_Os01g60650
Os.22478.1.S1_at--207--7891Chr01:35391500..35391524 (25 bp)
GGTTCAGAAGACGACTTGCATGCAT
LOC_Os01g60650
Os.22478.1.S1_at--1108--8731Chr01:35391439..35391463 (25 bp)
TGTAATATACACATTCGCCTCGAAC
LOC_Os01g60650
Os.22478.1.S1_at--888--6271Chr01:35391383..35391407 (25 bp)
GATGTACCTAGCTGTTTTCTGTTTC
LOC_Os01g60650
Os.22478.1.S1_at--251--5151Chr01:35391343..35391367 (25 bp)
GCAACGTTGTTGTGCTCTAAGCTTG
LOC_Os01g60650
Target Sequence 
AAATATTTTCGTGGTCCTTCTCAGTGGGGCGGTGACAGCCTTTTACACTCATCGTATTATGACTGGTGGTCACAAAGGTC
CAAGCTCCGAGAGTACTGCAGAGAACTAATGGTTACACATCACCCTGGATGAATCAGATGATCACAGGAACTTGGGTTTG
AAGATTGACTGGCCCATTTGCTTTCCGTTTCCATCCCCATCAAACTCAAGCAACCCTAGTTTGTCTTTAGTCCCCAAGTG
GCTGTGGACTTTGACGGTTGGGTTCAGAAGACGACTTGCATGCATACTCGTCCTCGCAGTTGCGCTCCTTTGTTCTCCCC
ATGTAATATACACATTCGCCTCGAACAACAATAAGAAATTGACCTCCAAAGGTCATAGATGTACCTAGCTGTTTTCTGTT
TCTTCTGTTTATTTGATGCAACGTTGTTGTGCTCTAAGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis