Browse Element(s) Details


Os.30568.1.S1_at

Description gb:AK108657.1
DB_XREF= gi:32993866
TID=Os.30568.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30568 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0703B11.23 (P0703B11.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-E07, full insert sequence.
FL= gb:AK108657.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6064011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60610NANA1+35364534..35367750retrotransposon protein, putative, unclassified
LOC_Os01g60620NANA1+35368373..35374602retrotransposon protein, putative, unclassified
LOC_Os01g60630OsAffx.20484.2.S1_at1/111+35379667..35380435hypothetical protein
LOC_Os01g60640Os.30568.1.S1_at11/111+35389587..35391468WRKY DNA binding domain containing protein, expressed
LOC_Os01g60650Os.22478.1.S1_at11/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60650Os.22478.2.S1_x_at9/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60650Os.22478.2.S1_at7/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60660Os.14124.1.S2_at11/111+35396100..35401337tRNA binding domain containing protein, putative, expressed
LOC_Os01g60660Os.14124.1.S1_at10/111+35396100..35401337tRNA binding domain containing protein, putative, expressed
LOC_Os01g60670Os.32417.1.S1_at11/111+35408774..35412437Leucine Rich Repeat family protein, expressed
LOC_Os01g60680OsAffx.23875.1.S1_at11/111+35415750..35419969hypothetical protein
LOC_Os01g60680OsAffx.23875.2.S1_at10/111+35415750..35419969hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005730cellular_componentnucleolus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30568.1.S1_at--1150--4771Chr01:35390737..35390761 (25 bp)
GCTGCCCCAAGAGTGCAGTAGTCTT
LOC_Os01g60640
Os.30568.1.S1_at--465--1831Chr01:35390768..35390792 (25 bp)
ACGCACAAAATTTCGCGGGAACTAT
LOC_Os01g60640
Os.30568.1.S1_at--335--7091Chr01:35390837..35390861 (25 bp)
GTCAGATAATCGCACGCACTATTTT
LOC_Os01g60640
Os.30568.1.S1_at--330--5491Chr01:35391099..35391123 (25 bp)
GAACACAAGACCGTCAGCTTGACGC
LOC_Os01g60640
Os.30568.1.S1_at--556--1551Chr01:35391114..35391138 (25 bp)
AGCTTGACGCATAACTGACGCACTT
LOC_Os01g60640
Os.30568.1.S1_at--695--2551Chr01:35391126..35391150 (25 bp)
AACTGACGCACTTCTGATGGTAACA
LOC_Os01g60640
Os.30568.1.S1_at--1120--1351Chr01:35391150..35391174 (25 bp)
AAAAAACCGGCCACCATGTCCCATG
LOC_Os01g60640
Os.30568.1.S1_at--208--1731Chr01:35391162..35391186 (25 bp)
ACCATGTCCCATGTGAACGAATGGA
LOC_Os01g60640
Os.30568.1.S1_at--820--6931Chr01:35391212..35391236 (25 bp)
GTAGTGACACTCAATTGCAATATCA
LOC_Os01g60640
Os.30568.1.S1_at--802--5191Chr01:35391228..35391252 (25 bp)
GCAATATCATGCTTGGTACAGGGTT
LOC_Os01g60640
Os.30568.1.S1_at--894--10311Chr01:35391270..35391294 (25 bp)
TTTAACCACCAATAGCAACAAGCTG
LOC_Os01g60640
Target Sequence 
GCTGCCCCAAGAGTGCAGTAGTCTTTGCAAAACGCACAAAATTTCGCGGGAACTATCGAATTTCCCGCGTTTGCGCTTAA
GTTAATAGCCTCAGTAGTTCGTCAGATAATCGCACGCACTATTTTAATTCAGGAAGGGATTTAGATTGACAAAGTATATT
AGGTGAGAGTTAATATGGGAGAATTCGTAATGAAGAGTTGAATGTGTTGACGTTGACGTACAGGGGAAAAACACATGCTA
AGAAGAAAAATGGCAGGTGAAAGGGGCAAGAAATGGCAAAGCTGAGCAACAGAGCAGGTAATAATAGAGAATTGCTACTC
CTACTACTTGCAAGCATATATGTCCAGAAGAGCAGCCAAAGAGAACACAAGACCGTCAGCTTGACGCATAACTGACGCAC
TTCTGATGGTAACAAAAAACCGGCCACCATGTCCCATGTGAACGAATGGATTCATTAGTTGTAATAATGGTAATAGTAGT
GACACTCAATTGCAATATCATGCTTGGTACAGGGTTAAGGATCAGATGGTTAGTTTAACCACCAATAGCAACAAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis