Browse Element(s) Details


Os.14124.1.S1_at

Description gb:AK073951.1
DB_XREF= gi:32983974
TID=Os.14124.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14124 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to methionyl-tRNA synthetase (P0703B11.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075A05, full insert sequence.
FL= gb:AK119168.1 gb:AK103171.1 gb:AK073951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6066010/11tRNA binding domain containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60620NANA1+35368373..35374602retrotransposon protein, putative, unclassified
LOC_Os01g60630OsAffx.20484.2.S1_at1/111+35379667..35380435hypothetical protein
LOC_Os01g60640Os.30568.1.S1_at11/111+35389587..35391468WRKY DNA binding domain containing protein, expressed
LOC_Os01g60650Os.22478.1.S1_at11/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60650Os.22478.2.S1_x_at9/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60650Os.22478.2.S1_at7/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60660Os.14124.1.S2_at11/111+35396100..35401337tRNA binding domain containing protein, putative, expressed
LOC_Os01g60660Os.14124.1.S1_at10/111+35396100..35401337tRNA binding domain containing protein, putative, expressed
LOC_Os01g60670Os.32417.1.S1_at11/111+35408774..35412437Leucine Rich Repeat family protein, expressed
LOC_Os01g60680OsAffx.23875.1.S1_at11/111+35415750..35419969hypothetical protein
LOC_Os01g60680OsAffx.23875.2.S1_at10/111+35415750..35419969hypothetical protein
LOC_Os01g60690OsAffx.23876.1.S1_x_at11/111+35421295..35421801hypothetical protein
LOC_Os01g60700Os.32685.1.S1_at11/111+35423026..35427468Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006431biological_processmethionyl-tRNA aminoacylation
GO:0000049molecular_functiontRNA binding
GO:0004825molecular_functionmethionine-tRNA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14124.1.S1_at--128--4471NONE
GCCTCGATCCGAATACAATATCCAG
NONE
Os.14124.1.S1_at--359--6111Chr01:35400198..35400222 (25 bp)
GAGTGATATTGCCACCCTGTTCTCA
LOC_Os01g60660
Os.14124.1.S1_at--1106--7631Chr01:35400061..35400085 (25 bp)
GGGTTGAATTTTCCAGCAATTTTGT
LOC_Os01g60660
Os.14124.1.S1_at--267--4991Chr01:35400018..35400042 (25 bp)
GCATGCATTGCTTGGTAATCTGAAT
LOC_Os01g60660
Os.14124.1.S1_at--954--5231Chr01:35399997..35400021 (25 bp)
GAATCAAGACTTGTCCCAGAAATCA
LOC_Os01g60660
Os.14124.1.S1_at--227--2271Chr01:35399978..35400002 (25 bp)
AAATCAGTTCTGTTGGGTAATGGTT
LOC_Os01g60660
Os.14124.1.S1_at--263--7431Chr01:35399927..35399951 (25 bp)
GTGTTTGCAACCATACAAGTTTTTG
LOC_Os01g60660
Os.14124.1.S1_at--508--3511Chr01:35399767..35399791 (25 bp)
CATGTATTGCGGTGGATGGACTATA
LOC_Os01g60660
Os.14124.1.S1_at--908--3411Chr01:35399220..35399244 (25 bp)
CAGAACATCGTTGATTTTGGCACAA
LOC_Os01g60660
Os.14124.1.S1_at--891--10751Chr01:35399178..35399202 (25 bp)
TTGACCAAATCTGTCTTCGATCCAC
LOC_Os01g60660
Os.14124.1.S1_at--29--2311Chr01:35398728..35398752 (25 bp)
AAAGGTGACACTGATCCAAGTTCAA
LOC_Os01g60660
Target Sequence 
GCCTCGATCCGAATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTCTCACATATTGTGAAATCG
AGTGAAGATGAGGTACTGAAATGGGTTGAATTTTCCAGCAATTTTGTTGGAAAATGTGGAGAACAGCATGCATTGCTTGG
TAATCTGAATCAAGACTTGTCCCAGAAATCAGTTCTGTTGGGTAATGGTTTTAAACCATCAGTTGCTGATATTGTTGTGT
TTGCAACCATACAAGTTTTTGTGAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGGATGGAC
TATATCCAGAACATCGTTGATTTTGGCACAACAGTACAAAAGGTTAACTTGACCAAATCTGTCTTCGATCCACCTTCTCA
TCCAAAGAAGGCAGATAAAGGTGACACTGATCCAAGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis