Browse Element(s) Details


Os.32417.1.S1_at

Description gb:AK105103.1
DB_XREF= gi:32990312
TID=Os.32417.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.32417 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0703B11.26 (P0703B11.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-D09, full insert sequence.
FL= gb:AK105103.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6067011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60640Os.30568.1.S1_at11/111+35389587..35391468WRKY DNA binding domain containing protein, expressed
LOC_Os01g60650Os.22478.1.S1_at11/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60650Os.22478.2.S1_x_at9/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60650Os.22478.2.S1_at7/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60660Os.14124.1.S2_at11/111+35396100..35401337tRNA binding domain containing protein, putative, expressed
LOC_Os01g60660Os.14124.1.S1_at10/111+35396100..35401337tRNA binding domain containing protein, putative, expressed
LOC_Os01g60670Os.32417.1.S1_at11/111+35408774..35412437Leucine Rich Repeat family protein, expressed
LOC_Os01g60680OsAffx.23875.1.S1_at11/111+35415750..35419969hypothetical protein
LOC_Os01g60680OsAffx.23875.2.S1_at10/111+35415750..35419969hypothetical protein
LOC_Os01g60690OsAffx.23876.1.S1_x_at11/111+35421295..35421801hypothetical protein
LOC_Os01g60700Os.32685.1.S1_at11/111+35423026..35427468Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32417.1.S1_at--264--5171Chr01:35409435..35409459 (25 bp)
GCAAGACTGTGAAGATTACCGAGAA
LOC_Os01g60670
Os.32417.1.S1_at--522--8111Chr01:35409278..35409302 (25 bp)
GGACTGCATGGATCCCAGGTTATGT
LOC_Os01g60670
Os.32417.1.S1_at--915--4331Chr01:35409264..35409288 (25 bp)
CCAGGTTATGTGGTGAATTCCCCAT
LOC_Os01g60670
Os.32417.1.S1_at--419--7351Chr01:35409252..35409276 (25 bp)
GTGAATTCCCCATGGAAGAGGCCTT
LOC_Os01g60670
Os.32417.1.S1_at--578--9551Chr01:35409149..35409173 (25 bp)
TCTTGAGCTGGTGAGGAGTCCTCAG
LOC_Os01g60670
Os.32417.1.S1_at--379--1611Chr01:35409108..35409132 (25 bp)
AGCTGGTTTAATGTCTCTTGCCAAC
LOC_Os01g60670
Os.32417.1.S1_at--597--9531Chr01:35409093..35409117 (25 bp)
TCTTGCCAACTCTGTTCTGAACGGT
LOC_Os01g60670
Os.32417.1.S1_at--205--8791Chr01:35409081..35409105 (25 bp)
TGTTCTGAACGGTTCTAGGCGTTTT
LOC_Os01g60670
Os.32417.1.S1_at--494--2931Chr01:35408932..35408956 (25 bp)
AAGGCTATTTTGTTGCTTCTCGGCA
LOC_Os01g60670
Os.32417.1.S1_at--1082--3751Chr01:35408914..35408938 (25 bp)
CTCGGCAATTCTTTGATCCATTTCT
LOC_Os01g60670
Os.32417.1.S1_at--171--10811Chr01:35408881..35408905 (25 bp)
TTGTTTTGCCATGTGGGCATTGCCT
LOC_Os01g60670
Target Sequence 
GCAAGACTGTGAAGATTACCGAGAAGTGCGACGTNTATGGCTTTGGAGTGCTCGTGCTGGAGGTCTTGACGGGCAGGAGG
CCGGTTGAGTACTTGGAAGATGATGTAGTTGTGCTATGTGATTTGGTGAGAAGCNCACTGGAGGAAGGTAGGCTGGAGGA
CTGCATGGATCCCAGGTTATGTGGTGAATTCCCCATGGAAGAGGCCTTGNCAATCATCAAGCTGGGCCTTGTTTGCANCT
CGCNGGTTNCATCGAANCGGNNAGACATGGGNGAANTGGTGAACATTCTTGAGCTGGTGAGGAGTCCTCAGGATAGTCTA
GAGGACGAGCTGGTTTAATGTCTCTTGCCAACTCTGTTCTGAACGGTTCTAGGCGTTTTTTTTTCCTTTTTGTTTTAATG
AGATGCATATAGTGTAATGCTAGGTGGGAAGAAATCAGAGAAAGCAAAGAGTGGTATGGATCGTGAAATGCTTGTAGTTT
GCTTGAAGTTTTAGGGAGGTTGCAAGGCTATTTTGTTGCTTCTCGGCAATTCTTTGATCCATTTCTTGGAAGAGTTGTTT
TGCCATGTGGGCATTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32417.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis