Browse Element(s) Details


Os.22478.2.S1_x_at

Description gb:NM_190361.1
DB_XREF= gi:34907805
GEN=P0703B11.24
TID=Os.22478.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.22478 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0703B11.24 (P0703B11.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0703B11.24 (P0703B11.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g606509/11non-green plastid inner envelope membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60610NANA1+35364534..35367750retrotransposon protein, putative, unclassified
LOC_Os01g60620NANA1+35368373..35374602retrotransposon protein, putative, unclassified
LOC_Os01g60630OsAffx.20484.2.S1_at1/111+35379667..35380435hypothetical protein
LOC_Os01g60640Os.30568.1.S1_at11/111+35389587..35391468WRKY DNA binding domain containing protein, expressed
LOC_Os01g60650Os.22478.1.S1_at11/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60650Os.22478.2.S1_x_at9/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60650Os.22478.2.S1_at7/111+35390826..35395056non-green plastid inner envelope membrane protein, putative, expressed
LOC_Os01g60660Os.14124.1.S2_at11/111+35396100..35401337tRNA binding domain containing protein, putative, expressed
LOC_Os01g60660Os.14124.1.S1_at10/111+35396100..35401337tRNA binding domain containing protein, putative, expressed
LOC_Os01g60670Os.32417.1.S1_at11/111+35408774..35412437Leucine Rich Repeat family protein, expressed
LOC_Os01g60680OsAffx.23875.1.S1_at11/111+35415750..35419969hypothetical protein
LOC_Os01g60680OsAffx.23875.2.S1_at10/111+35415750..35419969hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22478.2.S1_x_at--375--3371Chr01:35394635..35394659 (25 bp)
CACCTTCGCCGGAGAGGAATCTGTG
LOC_Os01g60650
Os.22478.2.S1_x_at--1051--51Chr01:35394028..35394052 (25 bp)
ATTGCAGGCGTATGGTGTCTACTCC
LOC_Os01g60650
Os.22478.2.S1_x_at--582--2911Chr01:35393937..35393961 (25 bp)
AAGGATCTCAGCGTGATTGCCACAG
LOC_Os01g60650
Os.22478.2.S1_x_at--223--4371NONE
CCACAGAGGTTGGAGGTTTCCTGAA
NONE
Os.22478.2.S1_x_at--117--5491Chr01:35393557..35393581 (25 bp)
GAACTTCATGCTTACTGGGAGGACA
LOC_Os01g60650
Os.22478.2.S1_x_at--1019--8631Chr01:35393542..35393566 (25 bp)
TGGGAGGACATCTGCAATTCGTTTT
LOC_Os01g60650
Os.22478.2.S1_x_at--1011--10851Chr01:35393519..35393543 (25 bp)
TTGGTATTATTCTTGGCTTTGCGCT
LOC_Os01g60650
Os.22478.2.S1_x_at--785--4571Chr01:35393499..35393523 (25 bp)
GCGCTGTTAGCTATGGGCATCTCAA
LOC_Os01g60650
Os.22478.2.S1_x_at--962--9411Chr01:35393446..35393470 (25 bp)
TCGTCCTCGTCTTCTGCTGAAAGGA
LOC_Os01g60650
Os.22478.2.S1_x_at--414--8151NONE
GGACAAGCTGCATGTGTTTTTCCCC
NONE
Os.22478.2.S1_x_at--1022--8651Chr01:35390947..35390971 (25 bp)
TGTGTTTTTCCCCTGTACGTCAACG
LOC_Os01g60650
Target Sequence 
CACCTTCGCCGGAGAGGAATCTGTGGGCTCAGAATCGGGTGATGACAAGGAAAAAGGGAAGGGTGAGATGAAGCCTGAGG
AAGCTCAAGAAGTGTGGAAGGAGATGCTTAAGCAGTTCAAGGATGAGGCGCAGCGAATGCACGGCCTGACATTGCAGGCG
TATGGTGTCTACTCCCAGAGGGCAAGGGAGGTGCTATTAGAGGCCTCAGAGAAGCTGAAGATCCACGCAGACAAAGCACA
GAAGGATCTCAGCGTGATTGCCACAGAGGTTGGAGGTTTCCTGAACTTCATGCTTACTGGGAGGACATCTGCAATTCGTT
TTGGTATTATTCTTGGCTTTGCGCTGTTAGCTATGGGCATCTCAAGTTTGAGATCTCAAAGAGCAGGTGGCCGTCGTCCT
CGTCTTCTGCTGAAAGGACAAGCTGCATGTGTTTTTCCCCTGTACGTCAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22478.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis