Browse Element(s) Details


Os.4644.1.S1_at

Description gb:U30477.1
DB_XREF= gi:1041709
GEN=Os-EXPA2
TID=Os.4644.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4644 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) expansin Os-EXPA2 (Os-EXPA2) mRNA, complete cds.
PROD=expansin Os-EXPA2
FL= gb:U30477.1 gb:AK070463.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6077011/11Alpha-expansin 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60730Os.35921.2.S1_x_at11/111+35448474..35449835Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g60730Os.35921.1.S1_at11/111+35448474..35449835Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g60740Os.8827.1.S1_at10/111+35456714..35457762Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os01g60750NANA1+35458392..35462509transposon protein, putative, unclassified
LOC_Os01g60760Os.15920.1.S1_at5/111+35465295..35466382hypothetical protein
LOC_Os01g60760Os.29856.1.S1_x_at1/111+35465295..35466382hypothetical protein
LOC_Os01g60770Os.4644.1.S1_at11/111+35472366..35474187Alpha-expansin 1 precursor, putative, expressed
LOC_Os01g60780Os.52286.1.S1_at11/111+35475553..35479902integral membrane protein, putative, expressed
LOC_Os01g60790Os.163.1.S1_at11/111+35480550..3548275040S ribosomal protein S26, putative, expressed
LOC_Os01g60800OsAffx.23877.2.S1_at11/111+35483290..35485628expressed protein
LOC_Os01g60810Os.14824.1.S1_at11/111+35494450..35496144uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g60820NANA1+35498495..35499819hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0005199molecular_functionstructural constituent of cell wall
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4644.1.S1_at--835--1071Chr01:35473668..35473692 (25 bp)
AGGGCGGCCAGTTCTGATCGAGTAC
LOC_Os01g60770
Os.4644.1.S1_at--320--6991Chr01:35473689..35473713 (25 bp)
GTACTCGGCTAATTCCGTTTTTCAG
LOC_Os01g60770
Os.4644.1.S1_at--662--6811Chr01:35473705..35473729 (25 bp)
GTTTTTCAGTTCACTTTTCTGCAGA
LOC_Os01g60770
Os.4644.1.S1_at--405--8011Chr01:35473768..35473792 (25 bp)
GGAGGCCTCTTTGCTATAGTAAAAG
LOC_Os01g60770
Os.4644.1.S1_at--614--10871Chr01:35473803..35473827 (25 bp)
TTGGCTATTCTGAGGCTGCTTATTA
LOC_Os01g60770
Os.4644.1.S1_at--760--9071Chr01:35473849..35473873 (25 bp)
TGCTTTCTCCCATAGGTCCAGTAGA
LOC_Os01g60770
Os.4644.1.S1_at--30--3851Chr01:35473916..35473935 (20 bp)
CTGCAATTGTTGTAGCCTTGGTTTA
LOC_Os01g60770
Os.4644.1.S1_at--653--1791Chr01:35473976..35474000 (25 bp)
CAGGGAGGTGGTGTCTTGTAACTTT
LOC_Os01g60770
Os.4644.1.S1_at--478--8071Chr01:35474057..35474081 (25 bp)
GGAGCACCGGAGCACTCTTGTGCTT
LOC_Os01g60770
Os.4644.1.S1_at--217--9591Chr01:35474072..35474096 (25 bp)
TCTTGTGCTTTTGGGACCATGAACT
LOC_Os01g60770
Os.4644.1.S1_at--299--6551Chr01:35474139..35474163 (25 bp)
GATTATACTTTCTTTTGTCGCCTTA
LOC_Os01g60770
Target Sequence 
AGGGCGGCCAGTTCTGATCGAGTACTCGGCTAATTCCGTTTTTCAGTTCACTTTTCTGCAGAAATGTCAGTGTGAGATTG
AGATTGAGGTGGAGGAGGAGGGAGGCCTCTTTGCTATAGTAAAAGAGAAGAGGCTTTGGCTATTCTGAGGCTGCTTATTA
ATTAGCACCCGCTTAGGCCTTTGCTTTCTCCCATAGGTCCAGTAGACATAAATAAGTTATCATGGAGTTGGGCATTTTTT
TTTTCTGCAATTGTTGTAGCCTTGGTTTAAAATTTGGCAAGGCAATTTAAGGATTATATTGTAGAACAGCAGGGAGGTGG
TGTCTTGTAACTTTTGTTGTTACATTGTAACCCCCCGAATCAGGCCACATGGGCCGGAGGAGTTTGTGGGGGAGCACCGG
AGCACTCTTGTGCTTTTGGGACCATGAACTATGCTAGTTTATGGGTCTATGTATATGATATGTTTGTGATTTGATTATAC
TTTCTTTTGTCGCCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis