Browse Element(s) Details


OsAffx.23877.2.S1_at

Description tigr:9629.m05980
TID=OsAffx.23877.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BT006246 At2g38500
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6080011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60750NANA1+35458392..35462509transposon protein, putative, unclassified
LOC_Os01g60760Os.15920.1.S1_at5/111+35465295..35466382hypothetical protein
LOC_Os01g60760Os.29856.1.S1_x_at1/111+35465295..35466382hypothetical protein
LOC_Os01g60770Os.4644.1.S1_at11/111+35472366..35474187Alpha-expansin 1 precursor, putative, expressed
LOC_Os01g60780Os.52286.1.S1_at11/111+35475553..35479902integral membrane protein, putative, expressed
LOC_Os01g60790Os.163.1.S1_at11/111+35480550..3548275040S ribosomal protein S26, putative, expressed
LOC_Os01g60800OsAffx.23877.2.S1_at11/111+35483290..35485628expressed protein
LOC_Os01g60810Os.14824.1.S1_at11/111+35494450..35496144uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g60820NANA1+35498495..35499819hypothetical protein
LOC_Os01g60830Os.12112.1.S1_at11/111+35502347..35503304expressed protein
LOC_Os01g60850Os.35434.1.S1_at9/111+35503300..35507063expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23877.2.S1_at--169--2971Chr01:35484681..35484705 (25 bp)
AATGGAGGATCTTGCACAATGCGTT
LOC_Os01g60800
OsAffx.23877.2.S1_at--350--6071Chr01:35484710..35484734 (25 bp)
GAGTTCTATCTGATAACGCCAGGAA
LOC_Os01g60800
OsAffx.23877.2.S1_at--99--951Chr01:35484730..35484754 (25 bp)
AGGAATCCTGAAGACTCTGCTCTGT
LOC_Os01g60800
OsAffx.23877.2.S1_at--901--5031Chr01:35484966..35485391 (25 bp)
GCAGATTCAGTTTTGCTATGTGCGA
LOC_Os01g60800
OsAffx.23877.2.S1_at--29--10111Chr01:35485383..35485407 (25 bp)
TATGTGCGAACTCAGGAATGGTCCA
LOC_Os01g60800
OsAffx.23877.2.S1_at--313--5891Chr01:35485446..35485470 (25 bp)
GAGCTGACTGATGAACCAAACCCGT
LOC_Os01g60800
OsAffx.23877.2.S1_at--1047--8511Chr01:35485480..35485504 (25 bp)
TGGAACTCTTGTACTCACCGGGTCA
LOC_Os01g60800
OsAffx.23877.2.S1_at--784--9131Chr01:35485507..35485531 (25 bp)
TGCGTCTTCCTGATGTTGGTCGACA
LOC_Os01g60800
OsAffx.23877.2.S1_at--1103--8811Chr01:35485520..35485544 (25 bp)
TGTTGGTCGACACGCAAGATGCATT
LOC_Os01g60800
OsAffx.23877.2.S1_at--127--6331Chr01:35485537..35485561 (25 bp)
GATGCATTGACCATCCCAAGACTGT
LOC_Os01g60800
OsAffx.23877.2.S1_at--21--2751Chr01:35485554..35485578 (25 bp)
AAGACTGTTTCTTTCAGGGACCAGA
LOC_Os01g60800
Target Sequence 
AATGGAGGATCTTGCACAATGCGTTATGAGAGTTCTATCTGATAACGCCAGGAATCCTGAAGACTCTGCTCTGTCTACAG
GGGCCGCGTCAATACTATGTCTGACACTATATAACTGTAACAAGTTGAAAACTCATTGGAGTGAGTTTGGCAGCACCAAT
CCTCCAAACTCGTACGCTTTGAGCATCCACCTCTCTGGACGAGACCAGGAAATTTGTCTGCGGAATCAGAGCGGGTCAAC
TTTCTTCAGTTTGCCGGCAGGCTCTATGCTTGTTACAATCGGCAAGCAGATTCAGTTTTGCTATGTGCGAACTCAGGAAT
GGTCCAATGGGGAGTTCAAGAATGCTGTTGGTGAGATACTATTTGAGCTGACTGATGAACCAAACCCGTTCATTTCCCTG
GAACTCTTGTACTCACCGGGTCACCTGCGTCTTCCTGATGTTGGTCGACACGCAAGATGCATTGACCATCCCAAGACTGT
TTCTTTCAGGGACCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23877.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis