Browse Element(s) Details


Os.35434.1.S1_at

Description gb:AK067536.1
DB_XREF= gi:32977554
TID=Os.35434.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35434 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0031D02.14 (P0031D02.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110B20, full insert sequence.
FL= gb:AK067536.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g608509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60780Os.52286.1.S1_at11/111+35475553..35479902integral membrane protein, putative, expressed
LOC_Os01g60790Os.163.1.S1_at11/111+35480550..3548275040S ribosomal protein S26, putative, expressed
LOC_Os01g60800OsAffx.23877.2.S1_at11/111+35483290..35485628expressed protein
LOC_Os01g60810Os.14824.1.S1_at11/111+35494450..35496144uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g60820NANA1+35498495..35499819hypothetical protein
LOC_Os01g60830Os.12112.1.S1_at11/111+35502347..35503304expressed protein
LOC_Os01g60850Os.35434.1.S1_at9/111+35503300..35507063expressed protein
LOC_Os01g60860Os.26377.1.S1_at11/111+35512410..35514852U-box domain containing protein, expressed
LOC_Os01g60870OsAffx.2376.1.S1_x_at1/111+35519312..35520114hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35434.1.S1_at--1072--8431Chr01:35503873..35503897 (25 bp)
TGGCCATTTTGCCTCCTAGTATGGA
LOC_Os01g60850
Os.35434.1.S1_at--230--8491Chr01:35503803..35503827 (25 bp)
TGGCGGCCATCCAAGAACACCATTT
LOC_Os01g60850
Os.35434.1.S1_at--994--7071Chr01:35503758..35503782 (25 bp)
GTCAAGATATGTATGGGCGTCCCTA
LOC_Os01g60850
Os.35434.1.S1_at--496--4031Chr01:35503731..35503755 (25 bp)
CGTAGCACGTTCTCTGAATCCAAGA
LOC_Os01g60850
Os.35434.1.S1_at--212--8211Chr01:35503656..35503680 (25 bp)
GGAATGTGTTCCATCCAAGATAACC
LOC_Os01g60850
Os.35434.1.S1_at--1015--7711Chr01:35503555..35503579 (25 bp)
GGGTGTATCTGTCCATGGTCAACGA
LOC_Os01g60850
Os.35434.1.S1_at--595--10011Chr01:35503459..35503483 (25 bp)
TAGCATTTCTTTTGACTTGAGTTTC
LOC_Os01g60850
Os.35434.1.S1_at--1008--6831Chr01:35503439..35503463 (25 bp)
GTTTCTGTTGAGCTCCTCTTATATT
LOC_Os01g60850
Os.35434.1.S1_at--870--10471Chr01:35503347..35503371 (25 bp)
TTAACATTTTCAGTCGTTCAGGTCT
LOC_Os01g60850
Os.35434.1.S1_at--575--6751NONE
GTTCAGGTCTGTTAAGTCGTTGCTT
NONE
Os.35434.1.S1_at--571--2851NONE
AAGTCGTTGCTTTGTTCGTGAGTAA
NONE
Target Sequence 
TGGCCATTTTGCCTCCTAGTATGGAGGATTCATTCTTCGGAAATTTGGATCATAGATCATTTGTTGAGAATGGCGGCCAT
CCAAGAACACCATTTTATCAGGCATTTGTGACAATGTCAAGATATGTATGGGCGTCCCTAACCGTAGCACGTTCTCTGAA
TCCAAGAGCAGAGATGTTCTATGTCAAGGGTGGTACTGAATTTAGGAGTAAACACATGGAATGTGTTCCATCCAAGATAA
CCAAAGAAGGAGACAAGGTCAGTGTTGGGTTTACAGTAATGCCGGGGTTTAAGATTGGATGCACTGTCATCAGATGCAGG
GTGTATCTGTCCATGGTCAACGAAAGAAACTTCTGAACACGTCATATAGCTACAGAATTAGGTAAGCAGCATCAGATAAC
CAGTTAGCTCTATATAGCATTTCTTTTGACTTGAGTTTCTGTTGAGCTCCTCTTATATTAGACCAGGGGCATAAGCTAAT
AGATAGATTAGTGTATTAACTTGCTCTGTAATACTTGATGTAATATTTAACATTTTCAGTCGTTCAGGTCTGTTAAGTCG
TTGCTTTGTTCGTGAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis