Browse Element(s) Details


Os.12112.1.S1_at

Description gb:CF305219
DB_XREF= gi:33676980
DB_XREF=CLD1--01-B18.b1
CLONE=CLD1--01-B18
TID=Os.12112.1
CNT=13
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12112 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0031D02.12 (P0031D02.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6083011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60780Os.52286.1.S1_at11/111+35475553..35479902integral membrane protein, putative, expressed
LOC_Os01g60790Os.163.1.S1_at11/111+35480550..3548275040S ribosomal protein S26, putative, expressed
LOC_Os01g60800OsAffx.23877.2.S1_at11/111+35483290..35485628expressed protein
LOC_Os01g60810Os.14824.1.S1_at11/111+35494450..35496144uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g60820NANA1+35498495..35499819hypothetical protein
LOC_Os01g60830Os.12112.1.S1_at11/111+35502347..35503304expressed protein
LOC_Os01g60850Os.35434.1.S1_at9/111+35503300..35507063expressed protein
LOC_Os01g60860Os.26377.1.S1_at11/111+35512410..35514852U-box domain containing protein, expressed
LOC_Os01g60870OsAffx.2376.1.S1_x_at1/111+35519312..35520114hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12112.1.S1_at--270--1731Chr01:35502503..35502527 (25 bp)
ACCAGATCAGTGAAGGTCTACGCAA
LOC_Os01g60830
Os.12112.1.S1_at--838--1511Chr01:35502552..35502576 (25 bp)
AGCAGTCATTGTTCGGGAGCATCAC
LOC_Os01g60830
Os.12112.1.S1_at--209--5691Chr01:35502587..35502611 (25 bp)
GACTTCTCGCAGGTCCGGTCGGAGA
LOC_Os01g60830
Os.12112.1.S1_at--227--5311Chr01:35502610..35502634 (25 bp)
GAAGGACGCGGAGCTTCTGTATGAA
LOC_Os01g60830
Os.12112.1.S1_at--539--2911Chr01:35502671..35502829 (25 bp)
AAGGAGCAGTATGGAGCACTTCGGA
LOC_Os01g60830
Os.12112.1.S1_at--943--2051Chr01:35502822..35502846 (25 bp)
ACTTCGGAGGAAGATCGGTGGCACC
LOC_Os01g60830
Os.12112.1.S1_at--673--7711Chr01:35502838..35502862 (25 bp)
GGTGGCACCTACAAGGATTTCTTCA
LOC_Os01g60830
Os.12112.1.S1_at--860--4171Chr01:35503065..35503089 (25 bp)
CCCAGGCAGGTCGACAAGCTAGGAA
LOC_Os01g60830
Os.12112.1.S1_at--652--3511Chr01:35503098..35503122 (25 bp)
CATGTCGCATGCTTGGAGAACCCAA
LOC_Os01g60830
Os.12112.1.S1_at--917--9571Chr01:35503135..35503159 (25 bp)
TCTTCGCCAAATTGTTCGCCAGATG
LOC_Os01g60830
Os.12112.1.S1_at--612--291Chr01:35503208..35503232 (25 bp)
ATAGATGGTGTTGTAGCCCCAAGAA
LOC_Os01g60830
Target Sequence 
ACCAGATCAGTGAAGGTCTACGCAAAGGAAGATGAGGAGAAGGGCAGCAAGCAGTCATTGTTCGGGAGCATCACCGAGGC
GCTGGACTTCTCGCAGGTCCGGTCGGAGAAGGACGCGGAGCTTCTGTATGAAGCCAGAGAGGCCACAAAGGATGGAGGAA
GGATGACAAAGGAGCAGTATGGAGCACTTCGGAGGAAGATCGGTGGCACCTACAAGGATTTCTTCAAGTCATATGTGGAT
GTTGACGGGGAATACGTAGAGGAAGGTTGGGTGGATAAGACCTGCAAAGTTTGCAAGAAGGACACTAGAGGGGAACCCAG
GCAGGTCGACAAGCTAGGAAGATATGCACATGTCGCATGCTTGGAGAACCCAAAACCGACCAACATCTTCGCCAAATTGT
TCGCCAGATGAACTTCAATTGTACAATCAAAGACATATTTTTACTCATGCTTAGATACATAGATGGTGTTGTAGCCCCAA
GAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis