Browse Element(s) Details


Os.26377.1.S1_at

Description gb:AK065307.1
DB_XREF= gi:32975325
TID=Os.26377.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26377 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative arm repeat containing protein (P0031D02.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002O10, full insert sequence.
FL= gb:AK065307.1 gb:AY224536.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6086011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60810Os.14824.1.S1_at11/111+35494450..35496144uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g60820NANA1+35498495..35499819hypothetical protein
LOC_Os01g60830Os.12112.1.S1_at11/111+35502347..35503304expressed protein
LOC_Os01g60850Os.35434.1.S1_at9/111+35503300..35507063expressed protein
LOC_Os01g60860Os.26377.1.S1_at11/111+35512410..35514852U-box domain containing protein, expressed
LOC_Os01g60870OsAffx.2376.1.S1_x_at1/111+35519312..35520114hypothetical protein
LOC_Os01g60880Os.35344.3.S1_x_at11/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880Os.35344.18.S1_x_at9/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.2.S1_s_at8/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.3.S1_x_at5/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.5.S1_x_at4/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.1.S1_s_at2/111+35535819..35542127transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26377.1.S1_at--959--7371Chr01:35512817..35512841 (25 bp)
GTGACCCAGGTCATGGCCGTGCCCG
LOC_Os01g60860
Os.26377.1.S1_at--438--9471Chr01:35512777..35512801 (25 bp)
TCTGGGAGCTGATGAGCATCGGCAC
LOC_Os01g60860
Os.26377.1.S1_at--730--9191Chr01:35512635..35512659 (25 bp)
TGCCATGATGGCTTCGTGAAAACCA
LOC_Os01g60860
Os.26377.1.S1_at--138--3171Chr01:35512612..35512636 (25 bp)
CAATCACAACTTGCCTCGTAGGATA
LOC_Os01g60860
Os.26377.1.S1_at--290--3431Chr01:35512550..35512574 (25 bp)
CAGAGTCTTTTTTAGGCTGTCAAGA
LOC_Os01g60860
Os.26377.1.S1_at--1061--7071Chr01:35512532..35512556 (25 bp)
GTCAAGATTCTTTGCTCCGAGAGAT
LOC_Os01g60860
Os.26377.1.S1_at--919--6111Chr01:35512501..35512525 (25 bp)
GAGTGTTTGATCAACTGTGCATACG
LOC_Os01g60860
Os.26377.1.S1_at--550--7331Chr01:35512485..35512509 (25 bp)
GTGCATACGAGCTTCAGTCCAATGT
LOC_Os01g60860
Os.26377.1.S1_at--954--10531Chr01:35512473..35512497 (25 bp)
TTCAGTCCAATGTAATCCCCTCCAA
LOC_Os01g60860
Os.26377.1.S1_at--1067--3151Chr01:35512450..35512474 (25 bp)
AATTCCAACTCAAATTGCGCCCTTT
LOC_Os01g60860
Os.26377.1.S1_at--178--9151Chr01:35512435..35512459 (25 bp)
TGCGCCCTTTCTTTTCTCGAAAGAT
LOC_Os01g60860
Target Sequence 
GTGACCCAGGTCATGGCCGTGCCCGGCGTGGAATGGGCGATCTGGGAGCTGATGAGCATCGGCACGGAGCGCGCCCGGCG
GAAGGCCGCCTCGCTCGGCCGGATATGCCGGCGGTGGGCAGCCGCCTCCGCCGCCGACGGGGAGCGAGGCGGNGGTTGCC
CCGTTGCCACCGTGGTGCCCCCTGCCATGATGGCTTCGTGAAAACCAATCACAACTTGCCTCGTAGGATAAGTTCAGAAA
CATAATTTTTCCCCCCTTCTTGCTGTACAGAGTCTTTTTTAGGCTGTCAAGATTCTTTGCTCCGAGAGATAATGGTGAGT
GTTTGATCAACTGTGCATACGAGCTTCAGTCCAATGTAATCCCCTCCAATTCCAACTCAAATTGCGCCCTTTCTTTTCTC
GAAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26377.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis