Browse Element(s) Details


Os.14824.1.S1_at

Description gb:AK064237.1
DB_XREF= gi:32974255
TID=Os.14824.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14824 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0031D02.11 (P0031D02.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A08, full insert sequence.
FL= gb:AK064237.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6081011/11uncharacterized plant-specific domain TIGR01568 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60770Os.4644.1.S1_at11/111+35472366..35474187Alpha-expansin 1 precursor, putative, expressed
LOC_Os01g60780Os.52286.1.S1_at11/111+35475553..35479902integral membrane protein, putative, expressed
LOC_Os01g60790Os.163.1.S1_at11/111+35480550..3548275040S ribosomal protein S26, putative, expressed
LOC_Os01g60800OsAffx.23877.2.S1_at11/111+35483290..35485628expressed protein
LOC_Os01g60810Os.14824.1.S1_at11/111+35494450..35496144uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g60820NANA1+35498495..35499819hypothetical protein
LOC_Os01g60830Os.12112.1.S1_at11/111+35502347..35503304expressed protein
LOC_Os01g60850Os.35434.1.S1_at9/111+35503300..35507063expressed protein
LOC_Os01g60860Os.26377.1.S1_at11/111+35512410..35514852U-box domain containing protein, expressed
LOC_Os01g60870OsAffx.2376.1.S1_x_at1/111+35519312..35520114hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005730cellular_componentnucleolus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14824.1.S1_at--781--6271Chr01:35494801..35494825 (25 bp)
GATGTAGCGGAAGAGCTCAGTCTCA
LOC_Os01g60810
Os.14824.1.S1_at--610--8191Chr01:35494793..35494817 (25 bp)
GGAAGAGCTCAGTCTCAAGCTCACT
LOC_Os01g60810
Os.14824.1.S1_at--328--5891Chr01:35494702..35494726 (25 bp)
GAGCTGTCGTCTTGAGAATCTTGGT
LOC_Os01g60810
Os.14824.1.S1_at--806--4791Chr01:35494675..35494699 (25 bp)
GCTCTAGCCTGTTAATGATCCTAAA
LOC_Os01g60810
Os.14824.1.S1_at--823--3871Chr01:35494607..35494631 (25 bp)
CTGTTCTTCTGTCTCTTTACATTTA
LOC_Os01g60810
Os.14824.1.S1_at--426--3871Chr01:35494599..35494623 (25 bp)
CTGTCTCTTTACATTTATGGTACTA
LOC_Os01g60810
Os.14824.1.S1_at--1118--10091Chr01:35494584..35494608 (25 bp)
TATGGTACTATACTACAGTAGCTAG
LOC_Os01g60810
Os.14824.1.S1_at--932--2291Chr01:35494555..35494579 (25 bp)
AAATGTGAGAGGCTAATCCAGGCAA
LOC_Os01g60810
Os.14824.1.S1_at--45--9751Chr01:35494542..35494566 (25 bp)
TAATCCAGGCAAAACAGGGTACTAC
LOC_Os01g60810
Os.14824.1.S1_at--178--7831Chr01:35494525..35494549 (25 bp)
GGTACTACTAGTACTGTAGAAATCA
LOC_Os01g60810
Os.14824.1.S1_at--504--2191Chr01:35494452..35494476 (25 bp)
ACAAATCTAATGGAGTCAAACAGTA
LOC_Os01g60810
Target Sequence 
GATGTAGCGGAAGAGCTCAGTCTCAAGCTCACTNGTGCTAGTGCAATGCAATGCAACTCTTGTCTTGCATGGTGAATCCN
ATGAGTCCCATCGTGCCNAGAGCTGTCGTCTTGAGAATCTTGGTTNGCTCTAGCCTGTTAATGATCCTAAAATTGGGTAT
GATAAATAGTGTTATCCNGACCTGGGATACTATGCTGTTCTTCTGTCTCTTTACATTTATGGTACTATACTACAGTAGCT
AGTATGAAATGTGAGAGGCTAATCCAGGCAAAACAGGGTACTACTAGTACTGTAGAAATCAACTATGGTAAAGACTAAAT
AGTGGTGTTGATAAATGATAATATTAATGACAAATCTAATGGAGTCAAACAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis