Browse Element(s) Details


Os.52286.1.S1_at

Description gb:AK066097.1
DB_XREF= gi:32976115
TID=Os.52286.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52286 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013056K15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056K15, full insert sequence.
FL= gb:AK066097.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6078011/11integral membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60740Os.8827.1.S1_at10/111+35456714..35457762Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os01g60750NANA1+35458392..35462509transposon protein, putative, unclassified
LOC_Os01g60760Os.15920.1.S1_at5/111+35465295..35466382hypothetical protein
LOC_Os01g60760Os.29856.1.S1_x_at1/111+35465295..35466382hypothetical protein
LOC_Os01g60770Os.4644.1.S1_at11/111+35472366..35474187Alpha-expansin 1 precursor, putative, expressed
LOC_Os01g60780Os.52286.1.S1_at11/111+35475553..35479902integral membrane protein, putative, expressed
LOC_Os01g60790Os.163.1.S1_at11/111+35480550..3548275040S ribosomal protein S26, putative, expressed
LOC_Os01g60800OsAffx.23877.2.S1_at11/111+35483290..35485628expressed protein
LOC_Os01g60810Os.14824.1.S1_at11/111+35494450..35496144uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g60820NANA1+35498495..35499819hypothetical protein
LOC_Os01g60830Os.12112.1.S1_at11/111+35502347..35503304expressed protein
LOC_Os01g60850Os.35434.1.S1_at9/111+35503300..35507063expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52286.1.S1_at--571--6491Chr01:35479329..35479353 (25 bp)
GATAGCACTTCTTTTCTGAAGCCTT
LOC_Os01g60780
Os.52286.1.S1_at--414--4851Chr01:35479357..35479381 (25 bp)
GCTACATTTGCGACTTGCAGCTATT
LOC_Os01g60780
Os.52286.1.S1_at--520--10371Chr01:35479381..35479405 (25 bp)
TTTTTTCATATCTCGTCCTTGCAAC
LOC_Os01g60780
Os.52286.1.S1_at--230--10011Chr01:35479408..35479432 (25 bp)
TAGCTGACCCGTTATTTTCTTTCAC
LOC_Os01g60780
Os.52286.1.S1_at--188--8991Chr01:35479566..35479590 (25 bp)
TGAAGCAGGGACTCTTCTCCTAGTA
LOC_Os01g60780
Os.52286.1.S1_at--377--5971Chr01:35479655..35479679 (25 bp)
GAGACTTGGACGCATGATCATCCCG
LOC_Os01g60780
Os.52286.1.S1_at--159--10551Chr01:35479732..35479756 (25 bp)
TTCATCGGCATTTTGCTCCAGTTCA
LOC_Os01g60780
Os.52286.1.S1_at--375--10011Chr01:35479764..35479788 (25 bp)
TAGCTAGTTCTGAAGGCTCCTTGCT
LOC_Os01g60780
Os.52286.1.S1_at--1121--10711Chr01:35479784..35479808 (25 bp)
TTGCTCTGCGTCTTGTACATACATA
LOC_Os01g60780
Os.52286.1.S1_at--431--8251Chr01:35479812..35479836 (25 bp)
GGCACCTATTTTTGCTACGACTGTA
LOC_Os01g60780
Os.52286.1.S1_at--176--7031Chr01:35479834..35479858 (25 bp)
GTACATAACATGTCCACGGCTGGAA
LOC_Os01g60780
Target Sequence 
GATAGCACTTCTTTTCTGAAGCCTTAATGCTACATTTGCGACTTGCAGCTATTTTTTTCATATCTCGTCCTTGCAACTTT
AGCTGACCCGTTATTTTCTTTCACTAACTTACTTTTTCGTGAATGTGCAAAAGGATTACACGTCAATATATTAGAACTTT
CACTAACTTACTATAATTCCTTGCTTCTCACCCATCGGTAATCGCCCTTGCTTATCAACCTGGCAGGTGAAAGGAGGTGA
AGCAGGGACTCTTCTCCTAGTACAGAACGGGTCAGCTAAAGTTGCAGATGGTGTTGTGACTGAGGGCCCAATGTGGAGGT
CAAACAGAGACTTGGACGCATGATCATCCCGCTCCTGCAGAAGGGATCAAGGGACTGACATATGGTCTGAAACCGGTGTA
ATTTTCATCGGCATTTTGCTCCAGTTCACTCCAGCTAGCTAGTTCTGAAGGCTCCTTGCTCTGCGTCTTGTACATACATA
TTCGGCACCTATTTTTGCTACGACTGTACATAACATGTCCACGGCTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis