Browse Element(s) Details


Os.8827.1.S1_at

Description gb:AK071598.1
DB_XREF= gi:32981621
TID=Os.8827.1
CNT=70
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8827 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative lipid transfer protein (P0485B12.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107C11, full insert sequence.
FL= gb:AK071598.1 gb:AK119174.1 gb:AK058275.1 gb:AK120044.1 gb:AK119258.1 gb:AK104079.1 gb:AK119732.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6074010/11Nonspecific lipid-transfer protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60710NANA1+35438768..35439598hypothetical protein
LOC_Os01g60720OsAffx.11679.2.A1_at10/111+35445719..35446849hypothetical protein
LOC_Os01g60720OsAffx.23366.1.S1_at1/111+35445719..35446849hypothetical protein
LOC_Os01g60730Os.35921.2.S1_x_at11/111+35448474..35449835Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g60730Os.35921.1.S1_at11/111+35448474..35449835Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g60740Os.8827.1.S1_at10/111+35456714..35457762Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os01g60750NANA1+35458392..35462509transposon protein, putative, unclassified
LOC_Os01g60760Os.15920.1.S1_at5/111+35465295..35466382hypothetical protein
LOC_Os01g60760Os.29856.1.S1_x_at1/111+35465295..35466382hypothetical protein
LOC_Os01g60770Os.4644.1.S1_at11/111+35472366..35474187Alpha-expansin 1 precursor, putative, expressed
LOC_Os01g60780Os.52286.1.S1_at11/111+35475553..35479902integral membrane protein, putative, expressed
LOC_Os01g60790Os.163.1.S1_at11/111+35480550..3548275040S ribosomal protein S26, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006649biological_processphospholipid transfer to membrane
GO:0006869biological_processlipid transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005618cellular_componentcell wall
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0005516molecular_functioncalmodulin binding
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8827.1.S1_at--1118--10552Chr04:15401554..15401573 (20 bp)
TTCTTCCTCTGTGGTGTTTAGCAGT
NONE
Os.8827.1.S1_at--579--10071Chr01:35457049..35457073 (25 bp)
TAGGGATCGTATGTCTCCACAGTTC
LOC_Os01g60740
Os.8827.1.S1_at--137--9231Chr01:35457026..35457050 (25 bp)
TCCTACTATAGTGTCGCTTGGGCGA
LOC_Os01g60740
Os.8827.1.S1_at--927--7051NONE
GTAACGCCTGTTGCTAGCTTTGGTC
NONE
Os.8827.1.S1_at--832--10851Chr01:35456941..35456965 (25 bp)
TTGGTCCTGATGTTCTCCATGTGAA
LOC_Os01g60740
Os.8827.1.S1_at--81--791Chr01:35456923..35456947 (25 bp)
ATGTGAACTGTGTCAACCGTCCATT
LOC_Os01g60740
Os.8827.1.S1_at--741--9711Chr01:35456911..35456935 (25 bp)
TCAACCGTCCATTGTTCTGCAAATC
LOC_Os01g60740
Os.8827.1.S1_at--312--5491Chr01:35456845..35456869 (25 bp)
GAACATGCATATGAACCCTCTTCAC
LOC_Os01g60740
Os.8827.1.S1_at--506--1811Chr01:35456831..35456855 (25 bp)
ACCCTCTTCACATGCACGGGAAAAG
LOC_Os01g60740
Os.8827.1.S1_at--1004--1391Chr01:35456808..35456832 (25 bp)
AGACATTCCGAACGCCATCATTTAG
LOC_Os01g60740
Os.8827.1.S1_at--251--10351Chr01:35456788..35456812 (25 bp)
TTTAGCAATACCACGCTCTTATCAC
LOC_Os01g60740
Target Sequence 
TTCTTCCTCTGTGGTGTTTAGCAGTTTAGGGATCGTATGTCTCCACAGTTCCTACTATAGTGTCGCTTGGGCGATGGTGG
AGCTATATTGTGCACTTTATAAGGTGGTGTTATTATGTAACGCCTGTTGCTAGCTTTGGTCCTGATGTTCTCCATGTGAA
CTGTGTCAACCGTCCATTGTTCTGCAAATCTGCAGTATGTACTGTGTGTGATAGTATCAAGCTGAACTTCTGAACATGCA
TATGAACCCTCTTCACATGCACGGGAAAAGACATTCCGAACGCCATCATTTAGCAATACCACGCTCTTATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8827.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis