Browse Element(s) Details


OsAffx.11182.1.S1_at

Description tigr:9629.m02325
TID=OsAffx.11182.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2408011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24050OsAffx.10640.1.S1_at11/111+13537124..13539301hypothetical protein
LOC_Os01g24060Os.24895.1.S1_at11/111+13543313..13549352Importin alpha-1b subunit, putative, expressed
LOC_Os01g24070Os.21239.1.S1_at6/111+13553141..13555606GATA zinc finger family protein, expressed
LOC_Os01g24080OsAffx.11182.1.S1_at11/111+13560432..13563690expressed protein
LOC_Os01g24090Os.53326.1.S1_at11/111+13564517..13567396expressed protein
LOC_Os01g24100Os.20602.2.S1_x_at11/111+13573702..13575876hAT family dimerisation domain containing protein
LOC_Os01g24110OsAffx.10638.2.S1_at11/111+13577382..13577867hypothetical protein
LOC_Os01g24120OsAffx.11183.1.S1_at10/111+13578243..13581067hypothetical protein
LOC_Os01g24120OsAffx.10638.1.S1_at7/111+13578243..13581067hypothetical protein
LOC_Os01g24130OsAffx.10637.4.S1_s_at1/111+13584037..13586912transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24130OsAffx.10637.3.S1_s_at1/111+13584037..13586912transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24130OsAffx.10637.1.S1_s_at1/111+13584037..13586912transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11182.1.S1_at--813--6731Chr01:13562496..13562520 (25 bp)
GTTCTTGCTGGGTTTTGGTCAGAGA
LOC_Os01g24080
OsAffx.11182.1.S1_at--1039--6331Chr01:13562553..13562577 (25 bp)
GATGCTCATAGAAGGGCCATTGCCA
LOC_Os01g24080
OsAffx.11182.1.S1_at--1058--5951Chr01:13563204..13563227 (24 bp)
GAGAATGTTCTTACTCAATCCCAAC
LOC_Os01g24080
OsAffx.11182.1.S1_at--788--9691Chr01:13563217..13563241 (25 bp)
TCAATCCCAACAACTACACCGAAAA
LOC_Os01g24080
OsAffx.11182.1.S1_at--525--511Chr01:13563259..13563283 (25 bp)
ATCGTCGTGGTGATATCCTACGCGA
LOC_Os01g24080
OsAffx.11182.1.S1_at--232--4811Chr01:13563288..13563312 (25 bp)
GCTCGTGATCGACGTGAGGTTCATC
LOC_Os01g24080
OsAffx.11182.1.S1_at--111--4111Chr01:13563366..13563390 (25 bp)
CGCACTGATCCGAGCTGAAGCTGAC
LOC_Os01g24080
OsAffx.11182.1.S1_at--756--3831Chr01:13563434..13563458 (25 bp)
CTGCTGCAACTGATCGCGAAGGCAA
LOC_Os01g24080
OsAffx.11182.1.S1_at--253--1951Chr01:13563502..13563526 (25 bp)
ACGGCGATGTCGGTTGTGCCCTACT
LOC_Os01g24080
OsAffx.11182.1.S1_at--925--4711Chr01:13563613..13563637 (25 bp)
GCTGGTCCTGATGCTGACGAGGCTC
LOC_Os01g24080
OsAffx.11182.1.S1_at--1113--8931Chr01:13563627..13563651 (25 bp)
TGACGAGGCTCAGCTGGCTGTACGA
LOC_Os01g24080
Target Sequence 
GTTCTTGCTGGGTTTTGGTCAGAGATGATATTGTACATTGCCCCCTCTGACAATATTGATGCTCATAGAAGGGCCATTGC
CAGAGGAGAATGTTCTTACTCAATCCCAACAACTACACCGAAAAAAATTGACGTGAGGTTCATCGTCGTGGTGATATCCT
ACGCGACCCTGCTCGTGATCGACGTGAGGTTCATCGTCCTCGCCGTCTTCCCCTTCATCGCGCTCGCCTTCATCGCCGCG
CTGTGCGTCGCACTGATCCGAGCTGAAGCTGACAATGGCGGCGAGCCTGGCGCAAGCAGCAGCAGTGCCAGTTCGGCTGC
TGCAACTGATCGCGAAGGCAACAAGAATACGACGACGACGGCGGCCGAGGAAGCCGAGCAGCTGACGGCGATGTCGGTTG
TGCCCTACTGGGCGCTATGTGTGACGGGGCACGGCCCGCGCCACGGACCTCGCCGTCACCCAGTTTCTCCTCTTCCTCAG
CGCCACACTGGGCGCGCTGGTCCTGATGCTGACGAGGCTCAGCTGGCTGTACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis