Browse Element(s) Details


OsAffx.10640.1.S1_at

Description tigr:9629.m02321
TID=OsAffx.10640.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2405011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24020Os.11283.1.S1_at10/111+13505969..13514208expressed protein
LOC_Os01g24030Os.12934.1.S1_at11/111+13522243..13524414adenosine monophosphate binding protein 2 AMPBP2, putative, expressed
LOC_Os01g24040OsAffx.19542.3.S1_x_at6/111+13525920..13531260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24050OsAffx.10640.1.S1_at11/111+13537124..13539301hypothetical protein
LOC_Os01g24060Os.24895.1.S1_at11/111+13543313..13549352Importin alpha-1b subunit, putative, expressed
LOC_Os01g24070Os.21239.1.S1_at6/111+13553141..13555606GATA zinc finger family protein, expressed
LOC_Os01g24080OsAffx.11182.1.S1_at11/111+13560432..13563690expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10640.1.S1_at--36--2811Chr01:13538715..13538739 (25 bp)
AAGATGTTCTCACCGCAGACTTTGG
LOC_Os01g24050
OsAffx.10640.1.S1_at--1064--2031Chr01:13538733..13538757 (25 bp)
ACTTTGGTACTGCTCTTCTCATGAT
LOC_Os01g24050
OsAffx.10640.1.S1_at--174--1331Chr01:13538770..13538794 (25 bp)
AGAGGTTTTCCTCAGGCAATACCCT
LOC_Os01g24050
OsAffx.10640.1.S1_at--308--431Chr01:13538799..13538823 (25 bp)
ATCATTCCTTGGTGGATGTCTGCAG
LOC_Os01g24050
OsAffx.10640.1.S1_at--1116--631Chr01:13538870..13538894 (25 bp)
ATGCTTCCACTCAATACCAGTGCAA
LOC_Os01g24050
OsAffx.10640.1.S1_at--1143--671Chr01:13538976..13539000 (25 bp)
ATGACTCGTTACTAGTGGGTGACCA
LOC_Os01g24050
OsAffx.10640.1.S1_at--761--2971Chr01:13539037..13539061 (25 bp)
AATGTGGGTGAGAGTCCTCCTCTAT
LOC_Os01g24050
OsAffx.10640.1.S1_at--332--7571Chr01:13539078..13539102 (25 bp)
GGGCGGAGCTTCACGTGGAACAACT
LOC_Os01g24050
OsAffx.10640.1.S1_at--215--391Chr01:13539122..13539146 (25 bp)
ATCACCTTTGCTTGGTTACTCATGG
LOC_Os01g24050
OsAffx.10640.1.S1_at--145--691Chr01:13539153..13539177 (25 bp)
ATGACTGCGGTGACTCCAGGATGAA
LOC_Os01g24050
OsAffx.10640.1.S1_at--36--8951Chr01:13539217..13539241 (25 bp)
TGACGATTGCTATGATCTCCCTATG
LOC_Os01g24050
Target Sequence 
AAGATGTTCTCACCGCAGACTTTGGTACTGCTCTTCTCATGATGCATATGGTCACAGAGGTTTTCCTCAGGCAATACCCT
GGGAATCATTCCTTGGTGGATGTCTGCAGAAAACTGTCAAACTATATGATATATCTTTTGGTTAACCACCCTTCCATGCT
TCCACTCAATACCAGTGCAATATCCTCGATTAAAACTGCGGAACGTATGTTCCAGAGGAGGACTAATGACATCTCTGATG
TTGAGCATTACAAAAATATCCATGACTCGTTACTAGTGGGTGACCAGCCTGAAGGAGATGGGGTACTTGACGAGCTGGTC
GAAATGTGGGTGAGAGTCCTCCTCTATTCCGCCGGCAAGTCAAGGGCGGAGCTTCACGTGGAACAACTGGCCAGTGGAGG
GGAGCTCATCACCTTTGCTTGGTTACTCATGGCCAAAAATGACTGCGGTGACTCCAGGATGAAAAGGATTCAAATCACAA
ATTTTAGTCCTCGTGATGAATCTGACGATTGCTATGATCTCCCTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis