Browse Element(s) Details


Os.12934.1.S1_at

Description gb:AK063921.1
DB_XREF= gi:32973939
TID=Os.12934.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12934 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative AMP-binding protein (B1045F02.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-B10, full insert sequence.
FL= gb:AK063921.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2403011/11adenosine monophosphate binding protein 2 AMPBP2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24010Os.31870.1.S1_at11/111+13499999..13510961PDR5-like ABC transporter, putative, expressed
LOC_Os01g24020Os.11283.1.S1_at10/111+13505969..13514208expressed protein
LOC_Os01g24030Os.12934.1.S1_at11/111+13522243..13524414adenosine monophosphate binding protein 2 AMPBP2, putative, expressed
LOC_Os01g24040OsAffx.19542.3.S1_x_at6/111+13525920..13531260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24050OsAffx.10640.1.S1_at11/111+13537124..13539301hypothetical protein
LOC_Os01g24060Os.24895.1.S1_at11/111+13543313..13549352Importin alpha-1b subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006083biological_processacetate metabolism
GO:0006097biological_processglyoxylate cycle
GO:0005777cellular_componentperoxisome
GO:0003987molecular_functionacetate-CoA ligase activity
GO:0016208molecular_functionAMP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12934.1.S1_at--732--891Chr01:13524196..13524220 (25 bp)
AGGCGCGCACCCACAGGGACAGCTG
LOC_Os01g24030
Os.12934.1.S1_at--629--7791Chr01:13524221..13524245 (25 bp)
GGTCTGGGAGAAGCAAGCTCTGAAC
LOC_Os01g24030
Os.12934.1.S1_at--206--5971Chr01:13524228..13524252 (25 bp)
GAGAAGCAAGCTCTGAACCGAGTTT
LOC_Os01g24030
Os.12934.1.S1_at--701--9731Chr01:13524254..13524278 (25 bp)
TCAATCGTAACTGCTGCTGCGAGAA
LOC_Os01g24030
Os.12934.1.S1_at--27--4771Chr01:13524266..13524290 (25 bp)
GCTGCTGCGAGAATGCGACTACGAT
LOC_Os01g24030
Os.12934.1.S1_at--78--4611Chr01:13524280..13524304 (25 bp)
GCGACTACGATGTTGCAACCAGTTA
LOC_Os01g24030
Os.12934.1.S1_at--59--6291Chr01:13524288..13524312 (25 bp)
GATGTTGCAACCAGTTAACGCAATA
LOC_Os01g24030
Os.12934.1.S1_at--1126--9791Chr01:13524303..13524327 (25 bp)
TAACGCAATATTGGCAGTCGATTCT
LOC_Os01g24030
Os.12934.1.S1_at--182--31Chr01:13524312..13524336 (25 bp)
ATTGGCAGTCGATTCTAATCAGGGT
LOC_Os01g24030
Os.12934.1.S1_at--712--10571Chr01:13524324..13524348 (25 bp)
TTCTAATCAGGGTGGATGTACATCC
LOC_Os01g24030
Os.12934.1.S1_at--309--7031Chr01:13524341..13524365 (25 bp)
GTACATCCATTTATTACATGACAAA
LOC_Os01g24030
Target Sequence 
AGGCGCGCACCCACAGGGACAGCTGGGTCTGGGAGAAGCAAGCTCTGAACCGAGTTTNTCAATCGTAACTGCTGCTGCGA
GAATGCGACTACGATGTTGCAACCAGTTAACGCAATATTGGCAGTCGATTCTAATCAGGGTGGATGTACATCCATTTATT
ACATGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis