Browse Element(s) Details


Os.11283.1.S1_at

Description gb:AU071082
DB_XREF= gi:5038972
DB_XREF=AU071082
CLONE=R10715_1A
TID=Os.11283.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11283 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1045F02.12 (B1045F02.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2402010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23980OsAffx.22848.4.S1_x_at1/111+13478759..13484717retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23980OsAffx.22848.3.S1_x_at1/111+13478759..13484717retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23990OsAffx.23364.1.S1_x_at9/111+13490800..13491351expressed protein
LOC_Os01g23990OsAffx.23364.1.S1_at9/111+13490800..13491351expressed protein
LOC_Os01g24010Os.31870.1.S1_at11/111+13499999..13510961PDR5-like ABC transporter, putative, expressed
LOC_Os01g24020Os.11283.1.S1_at10/111+13505969..13514208expressed protein
LOC_Os01g24030Os.12934.1.S1_at11/111+13522243..13524414adenosine monophosphate binding protein 2 AMPBP2, putative, expressed
LOC_Os01g24040OsAffx.19542.3.S1_x_at6/111+13525920..13531260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24050OsAffx.10640.1.S1_at11/111+13537124..13539301hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11283.1.S1_at--989--9891Chr01:13514109..13514133 (25 bp)
TACTACGCCAAGTACGCCCGCGAGA
LOC_Os01g24020
Os.11283.1.S1_at--901--1171Chr01:13514099..13514123 (25 bp)
AGTACGCCCGCGAGAACTTCGTCAA
LOC_Os01g24020
Os.11283.1.S1_at--390--7711NONE
GGGTCCTCTCCAAGTACTCGATCGA
NONE
Os.11283.1.S1_at--1006--2831Chr01:13513877..13513900 (24 bp)
AAGTACTCGATCGACGCGGATGCTG
LOC_Os01g24020
Os.11283.1.S1_at--695--4091Chr01:13513783..13513807 (25 bp)
CGACGAAATGCTTCGCCGCGTCATG
LOC_Os01g24020
Os.11283.1.S1_at--280--7131Chr01:13513764..13513788 (25 bp)
GTCATGCCAGCGTCAGTTAGCTCTA
LOC_Os01g24020
Os.11283.1.S1_at--995--9611Chr01:13513752..13513776 (25 bp)
TCAGTTAGCTCTACCCCGTTGTTTT
LOC_Os01g24020
Os.11283.1.S1_at--348--4231Chr01:13513737..13513761 (25 bp)
CCGTTGTTTTTACTTGCCTTGCTAG
LOC_Os01g24020
Os.11283.1.S1_at--513--9891Chr01:13513727..13513751 (25 bp)
TACTTGCCTTGCTAGCGGTTGGCGG
LOC_Os01g24020
Os.11283.1.S1_at--182--3951Chr01:13513712..13513736 (25 bp)
CGGTTGGCGGGCATTTGGACTTCTT
LOC_Os01g24020
Os.11283.1.S1_at--958--7571Chr01:13513704..13513728 (25 bp)
GGGCATTTGGACTTCTTGTTTTTTG
LOC_Os01g24020
Target Sequence 
TACTACGCCAAGTACGCCCGCGAGAACTTCGTCAACTACCGCGACCTCTCCGCTGACGACGACCTCGCCGCCCTCCTCCG
CCGCGCCTACGCCCACTCCTCCTGGGTCCTCTCCAAGTACTCGATCGACGCGGATGCTGCGGCGGGGCGGCTCAAGGAGG
TGTGCGGCGCCGAGGGCGGANCGTGAGCACGCGTGCGCGCGAGGTGTTCGACGAAATGCTTCGCCGCGTCATGCCAGCGT
CAGTTAGCTCTACCCCGTTGTTTTTACTTGCCTTGCTAGCGGTTGGCGGGCATTTGGACTTCTTGTTTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis