Browse Element(s) Details


Os.31870.1.S1_at

Description gb:AY332479.1
DB_XREF= gi:33242922
GEN=PDR5
TID=Os.31870.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31870 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ATPase (PDR5) mRNA, complete cds.
PROD=putative ATPase
FL= gb:AK106603.1 gb:AY332479.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2401011/11PDR5-like ABC transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23980OsAffx.22848.4.S1_x_at1/111+13478759..13484717retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23980OsAffx.22848.3.S1_x_at1/111+13478759..13484717retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23990OsAffx.23364.1.S1_x_at9/111+13490800..13491351expressed protein
LOC_Os01g23990OsAffx.23364.1.S1_at9/111+13490800..13491351expressed protein
LOC_Os01g24010Os.31870.1.S1_at11/111+13499999..13510961PDR5-like ABC transporter, putative, expressed
LOC_Os01g24020Os.11283.1.S1_at10/111+13505969..13514208expressed protein
LOC_Os01g24030Os.12934.1.S1_at11/111+13522243..13524414adenosine monophosphate binding protein 2 AMPBP2, putative, expressed
LOC_Os01g24040OsAffx.19542.3.S1_x_at6/111+13525920..13531260retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31870.1.S1_at--821--71Chr01:13510265..13510289 (25 bp)
ATTGCTGTATTTCACGTTCTTCGGA
LOC_Os01g24010
Os.31870.1.S1_at--329--1551Chr01:13510320..13510344 (25 bp)
AGCATTGCAGCTATCATTTCACCAG
LOC_Os01g24010
Os.31870.1.S1_at--19--7951Chr01:13510374..13510394 (21 bp)
GGATATCTTATACCTCGACCTAAAA
LOC_Os01g24010
Os.31870.1.S1_at--884--10851Chr01:13510556..13510580 (25 bp)
TTGGTTGCCTCCCAGTTTGGAAATA
LOC_Os01g24010
Os.31870.1.S1_at--949--1371Chr01:13510603..13510627 (25 bp)
AGACCAAACCGTGGCTCAGTTCATT
LOC_Os01g24010
Os.31870.1.S1_at--143--831Chr01:13510638..13510662 (25 bp)
ATGGTTTCCATCATGACTTACTATG
LOC_Os01g24010
Os.31870.1.S1_at--1051--9891Chr01:13510656..13510680 (25 bp)
TACTATGGCTTGTTGCCGTTGTGCA
LOC_Os01g24010
Os.31870.1.S1_at--25--4511Chr01:13510670..13510694 (25 bp)
GCCGTTGTGCATGTTGTTTTCACTG
LOC_Os01g24010
Os.31870.1.S1_at--514--6811Chr01:13510685..13510709 (25 bp)
GTTTTCACTGTGATGTTCGCTTTCC
LOC_Os01g24010
Os.31870.1.S1_at--1028--10631Chr01:13510700..13510724 (25 bp)
TTCGCTTTCCTGTTCAGTTTTGCAA
LOC_Os01g24010
Os.31870.1.S1_at--956--6631Chr01:13510855..13510879 (25 bp)
GTTGTAACCAGCTCATACTAGGCAG
LOC_Os01g24010
Target Sequence 
ATTGCTGTATTTCACGTTCTTCGGAATGATGGCAGTAGGATTGACACCAAACGAGAGCATTGCAGCTATCATTTCACCAG
CAATCTACAATGCATGGAACCTCTTCTCAGGATATCTTATACCTCGACCTAAAATTCCTGTCTGGTGGAGGTGGTACTGT
TGGATTTGCCCTGTTGCATGGACATTGTATGGATTGGTTGCCTCCCAGTTTGGAAATATCCAAACTAAACTTGATGGCAA
AGACCAAACCGTGGCTCAGTTCATTACGGAATACTATGGTTTCCATCATGACTTACTATGGCTTGTTGCCGTTGTGCATG
TTGTTTTCACTGTGATGTTCGCTTTCCTGTTCAGTTTTGCAATCATGAAGTTCAACTTCCAGAGGAGATGAAGAAGATGC
CATTCTTAGATGTAGTCGTAGAAGATGGTGTAGTCTCATATATAGAGTTTATTTTCATTCGGTACATAGAAAATGTAACA
AGTTCCTTGTAAGTTGTAACCAGCTCATACTAGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31870.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis