Browse Element(s) Details


Os.24895.1.S1_at

Description gb:AK100070.1
DB_XREF= gi:32985279
TID=Os.24895.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24895 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative impotin alpha 1b (B1045F02.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169D11, full insert sequence.
FL= gb:AK100070.1 gb:AK058467.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2406011/11Importin alpha-1b subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24030Os.12934.1.S1_at11/111+13522243..13524414adenosine monophosphate binding protein 2 AMPBP2, putative, expressed
LOC_Os01g24040OsAffx.19542.3.S1_x_at6/111+13525920..13531260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24050OsAffx.10640.1.S1_at11/111+13537124..13539301hypothetical protein
LOC_Os01g24060Os.24895.1.S1_at11/111+13543313..13549352Importin alpha-1b subunit, putative, expressed
LOC_Os01g24070Os.21239.1.S1_at6/111+13553141..13555606GATA zinc finger family protein, expressed
LOC_Os01g24080OsAffx.11182.1.S1_at11/111+13560432..13563690expressed protein
LOC_Os01g24090Os.53326.1.S1_at11/111+13564517..13567396expressed protein
LOC_Os01g24100Os.20602.2.S1_x_at11/111+13573702..13575876hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006952biological_processdefense response
GO:0005634cellular_componentnucleus
GO:0005635cellular_componentnuclear envelope
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24895.1.S1_at--320--1671Chr01:13548668..13548692 (25 bp)
AGCCCTTTCTTATTCCATCTGTATC
LOC_Os01g24060
Os.24895.1.S1_at--249--6791Chr01:13548981..13549005 (25 bp)
GTTATCCGAGTCATGGTTTGGTCCT
LOC_Os01g24060
Os.24895.1.S1_at--434--6871Chr01:13548996..13549020 (25 bp)
GTTTGGTCCTGCTAACTTGTTATGA
LOC_Os01g24060
Os.24895.1.S1_at--677--5051Chr01:13549022..13549046 (25 bp)
GCAGCAGTCAGGGTTCGTCCGATAA
LOC_Os01g24060
Os.24895.1.S1_at--927--9871Chr01:13549074..13549098 (25 bp)
TACATTGCTTTTGTGTGGTTCGGGT
LOC_Os01g24060
Os.24895.1.S1_at--623--7131Chr01:13549099..13549123 (25 bp)
GTCTTGTGTATAGCGGTTGGTTCAT
LOC_Os01g24060
Os.24895.1.S1_at--1016--811Chr01:13549124..13549148 (25 bp)
ATGGATTATGGTTCTCCACACAAGG
LOC_Os01g24060
Os.24895.1.S1_at--1084--2871Chr01:13549179..13549203 (25 bp)
AAGGGCATACTCTTGCTTGTGTTGT
LOC_Os01g24060
Os.24895.1.S1_at--318--7371Chr01:13549197..13549221 (25 bp)
GTGTTGTCGGGTTAGCTATTACTTT
LOC_Os01g24060
Os.24895.1.S1_at--445--9731Chr01:13549216..13549240 (25 bp)
TACTTTTACCTTCCTTTCAGTAGCG
LOC_Os01g24060
Os.24895.1.S1_at--895--9991Chr01:13549236..13549260 (25 bp)
TAGCGTAAGCTGGTATGTCTGTGGA
LOC_Os01g24060
Target Sequence 
AGCCCTTTCTTATTCCATCTGTATCTGAATCTGAATCTGACAATGAAATGTTTCAGTTTGGCAGTTTCGGTAAAGGTAAA
TTTCTATTCACTAATGGTTGGAACTGTGAATCTGAATCTGACAATGAAATGTTTCAGTTTGGCAGTTTCGGTGAAGNNNN
NNNTNTNNNTNNNNANNNACCGTAGCTGTCTGTTCAGGGGGCTTTCCAGAATCGGAGAGTCAAGTTATCCGAGTCATGGT
TTGGTCCTGCTAACTTGTTATGAGGCAGCAGTCAGGGTTCGTCCGATAAGAGCAAGGTCAGGGTATGGCAATTAGGTACA
TTGCTTTTGTGTGGTTCGGGTGTCTTGTGTATAGCGGTTGGTTCATATGGATTATGGTTCTCCACACAAGGGGGTGGGTA
CTGGAAATTGGTCGGTCGGGGAAGGGCATACTCTTGCTTGTGTTGTCGGGTTAGCTATTACTTTTACCTTCCTTTCAGTA
GCGTAAGCTGGTATGTCTGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24895.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis