Browse Element(s) Details


Os.21239.1.S1_at

Description gb:AK067244.1
DB_XREF= gi:32977262
TID=Os.21239.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21239 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1045F02.18 (B1045F02.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098C17, full insert sequence.
FL= gb:AK067244.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g240706/11GATA zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24040OsAffx.19542.3.S1_x_at6/111+13525920..13531260retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g24050OsAffx.10640.1.S1_at11/111+13537124..13539301hypothetical protein
LOC_Os01g24060Os.24895.1.S1_at11/111+13543313..13549352Importin alpha-1b subunit, putative, expressed
LOC_Os01g24070Os.21239.1.S1_at6/111+13553141..13555606GATA zinc finger family protein, expressed
LOC_Os01g24080OsAffx.11182.1.S1_at11/111+13560432..13563690expressed protein
LOC_Os01g24090Os.53326.1.S1_at11/111+13564517..13567396expressed protein
LOC_Os01g24100Os.20602.2.S1_x_at11/111+13573702..13575876hAT family dimerisation domain containing protein
LOC_Os01g24110OsAffx.10638.2.S1_at11/111+13577382..13577867hypothetical protein
LOC_Os01g24120OsAffx.11183.1.S1_at10/111+13578243..13581067hypothetical protein
LOC_Os01g24120OsAffx.10638.1.S1_at7/111+13578243..13581067hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009735biological_processresponse to cytokinin stimulus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21239.1.S1_at--787--2711Chr01:13555191..13555215 (25 bp)
AAGCACACACCACCAATGGTTCCAG
LOC_Os01g24070
Os.21239.1.S1_at--809--211Chr01:13555305..13555329 (25 bp)
ATTTGTGGCGATCTGATGACTCCGT
LOC_Os01g24070
Os.21239.1.S1_at--149--9291Chr01:13555340..13555364 (25 bp)
TCCGTGCCGCTGTATCGTAGATAAA
LOC_Os01g24070
Os.21239.1.S1_at--13--6451Chr01:13555367..13555391 (25 bp)
GATCATGTCGACCTTATCTGTTTGT
LOC_Os01g24070
Os.21239.1.S1_at--1143--391Chr01:13555413..13555437 (25 bp)
ATCAGAGGTCCGTTGATCTCACTCA
LOC_Os01g24070
Os.21239.1.S1_at--242--5311Chr01:13555534..13555558 (25 bp)
GAAGGAGACATCGTTCCTCTTCATT
LOC_Os01g24070
Os.21239.1.S1_at--1129--4291Chr01:13555604..13555628 (25 bp)
CCTAGACTACGTTTGGCACTGGTTT
NONE
Os.21239.1.S1_at--278--8251Chr01:13555618..13555642 (25 bp)
GGCACTGGTTTATTTCTACTTTGAA
NONE
Os.21239.1.S1_at--800--6571NONE
GATTCTCAATTCTCGTAACTGATCA
NONE
Os.21239.1.S1_at--972--2551NONE
AACTGATCAGATCCTGCATCACAAA
NONE
Os.21239.1.S1_at--1030--5051Chr01:13555723..13555747 (25 bp)
GCAGCATAGCCTAAGTGCATGAATT
NONE
Target Sequence 
AAGCACACACCACCAATGGTTCCAGATCATACAGGNTTTCTTGGTTTATCAGGATGAGATAGGGGAGGGGCCCTATCTGA
AGAAGATGATGATGATGGGATAATGTGAGGGATGGATTTGTGGCGATCTGATGACTCCGTCTGCTCCTTCTCCGTGCCGC
TGTATCGTAGATAAATTGATCATGTCGACCTTATCTGTTTGTGATTGTGGTAGGATCCATATGATCAGAGGTCCGTTGAT
CTCACTCACACCCTTCTTTTTTTGTCCTTTTATTTTTTATTTCCTTCTTTTTTGTTCTTCGAATATGTACATCGATGTTG
CCCCCTGTGAGGGAATGATGGTCAGAAGGAGACATCGTTCCTCTTCATTCTGAAATAAAAGTGAAAGTAATAAAGAATTT
ATTTGTTCATCACNCCTAGACTACGTTTGGCACTGGTTTATTTCTACTTTGAATTCAAAACTTTTATGAAAGCATTCTAA
GGTCAGTAAAGATTCTCAATTCTCGTAACTGATCAGATCCTGCATCACAAATGCAGCATAGCCTAAGTGCATGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis