Browse Element(s) Details


Os.8724.1.S1_at

Description gb:AK072982.1
DB_XREF= gi:32983005
TID=Os.8724.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8724 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149I22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149I22, full insert sequence.
FL= gb:AK072982.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3740011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37360Os.51851.1.S1_at4/117+22384653..22385267transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g37370OsAffx.28798.2.S1_s_at11/117+22388990..22390874hypothetical protein
LOC_Os07g37370OsAffx.28798.1.S1_at8/117+22388990..22390874hypothetical protein
LOC_Os07g37380NANA7+22402345..22403543expressed protein
LOC_Os07g37390OsAffx.5560.1.S1_at9/117+22408440..22409259hypothetical protein
LOC_Os07g37400Os.8724.1.S1_at11/117+22409532..22411377F-box domain containing protein, expressed
LOC_Os07g37410OsAffx.28340.3.S1_x_at11/117+22413096..22413977hypothetical protein
LOC_Os07g37410OsAffx.28340.1.S1_x_at1/117+22413096..22413977hypothetical protein
LOC_Os07g37420OsAffx.5561.1.S1_s_at11/117+22414480..22415518Short-chain type dehydrogenase/reductase, putative, expressed
LOC_Os07g37430OsAffx.28800.1.S1_x_at8/117+22416251..22417102hypothetical protein
LOC_Os07g37440OsAffx.16597.1.S1_at11/117+22417314..22418394hypothetical protein
LOC_Os07g37454OsAffx.28801.1.S1_s_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37454Os.55618.1.S2_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37454Os.55618.1.S1_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37470Os.47463.1.S1_x_at3/117+22433886..22439389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g37470Os.14491.2.S1_x_at2/117+22433886..22439389transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8724.1.S1_at--946--4211Chr07:22410188..22410212 (25 bp)
CCGCTGCTCCTAGTGTCAAAACAAG
LOC_Os07g37400
Os.8724.1.S1_at--659--1351Chr07:22410022..22410046 (25 bp)
AGAGAGCAGCATTTCGCGTTTGCGA
LOC_Os07g37400
Os.8724.1.S1_at--649--391Chr07:22409878..22409902 (25 bp)
ATCAGCGTCAACCTGTTCGAGGCGT
LOC_Os07g37400
Os.8724.1.S1_at--514--10191Chr07:22409826..22409850 (25 bp)
TATTATTACAGGACACGCGCTTCAG
LOC_Os07g37400
Os.8724.1.S1_at--614--1831Chr07:22409812..22409836 (25 bp)
ACGCGCTTCAGTTTCAGCAATTCAG
LOC_Os07g37400
Os.8724.1.S1_at--574--131Chr07:22409793..22409817 (25 bp)
ATTCAGCTTATACTTTGCTCGTGTA
LOC_Os07g37400
Os.8724.1.S1_at--323--4811Chr07:22409777..22409801 (25 bp)
GCTCGTGTATATTTTCATCCTTTTA
LOC_Os07g37400
Os.8724.1.S1_at--41--6111Chr07:22409721..22409745 (25 bp)
GAGTGCATTTTGTAGCTCACGTCAA
LOC_Os07g37400
Os.8724.1.S1_at--896--2291Chr07:22409621..22409645 (25 bp)
AAATGGTCGTTCTTCAATGCTGTGA
LOC_Os07g37400
Os.8724.1.S1_at--1140--2751Chr07:22409593..22409617 (25 bp)
AAGAGAACACGACGCCTTGTGTAAT
LOC_Os07g37400
Os.8724.1.S1_at--477--8051Chr07:22409533..22409557 (25 bp)
GGAGATCTCTCTTCTTTTTTATGTG
LOC_Os07g37400
Target Sequence 
CCGCTGCTCCTAGTGTCAAAACAAGTTAGCGAAGCAACGGTGGTTGCGAGAGAGCAGCATTTCGCGTTTGCGACGCCATC
CNTCGAAGGCCGCCTTGAGAGGCGGCGAGGAGGAAGAAGAAGCTCCCGGGGCGCCCAAGCTGCAACGCAGGGTTGCGAGG
TCGTCGCCCGTCTGGGGCAAGAACCTTGCCAGCATCAGCGTCAACCTGTTCGAGGCGTTCGAATCGGAGGTTGTAGAGAT
GTAAATATTATTACAGGACACGCGCTTCAGTTTCAGCAATTCAGCTTATACTTTGCTCGTGTATATTTTCATCCTTTTAG
TGTTCTTAGTGTTAGGTTATAAAATGTTAGGAGTGCATTTTGTAGCTCACGTCAAACAGAGGAGAAAAAAAACTTAGGTA
GTGATACTGTTATTAATCTCATACTAGTAGCATGTGTTAGGAGTAGCTATAAATGGTCGTTCTTCAATGCTGTGATTGAA
GAGAACACGACGCCTTGTGTAATAAGTTTCATATAAGCATCGAATGCATGAATTATCAGGAGATCTCTCTTCTTTTTTAT
GTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8724.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis