Browse Element(s) Details


OsAffx.23363.1.S1_at

Description gb:NM_183946.1
DB_XREF= gi:34895019
GEN=B1045F02.4
TID=OsAffx.23363.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) receptor protein kinase-like protein (B1045F02.4), mRNA.
PROD=receptor protein kinase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2397011/11serine/threonine kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23930Os.38395.4.S1_x_at9/111+13443925..13449960transposon protein, putative, Mutator sub-class
LOC_Os01g23930Os.38395.3.S1_x_at9/111+13443925..13449960transposon protein, putative, Mutator sub-class
LOC_Os01g23930Os.38395.2.S1_x_at8/111+13443925..13449960transposon protein, putative, Mutator sub-class
LOC_Os01g23940OsAffx.23361.2.S1_at11/111+13450471..13452240hypothetical protein
LOC_Os01g23940OsAffx.23361.2.S1_x_at11/111+13450471..13452240hypothetical protein
LOC_Os01g23940Os.56255.1.S1_x_at1/111+13450471..13452240hypothetical protein
LOC_Os01g23940Os.29803.1.S1_x_at1/111+13450471..13452240hypothetical protein
LOC_Os01g23960OsAffx.19776.1.S1_at1/111+13458296..13465137retrotransposon protein, putative, unclassified
LOC_Os01g23960OsAffx.20615.1.S1_at1/111+13458296..13465137retrotransposon protein, putative, unclassified
LOC_Os01g23970OsAffx.23363.1.S1_at11/111+13470386..13473432serine/threonine kinase, putative
LOC_Os01g23970OsAffx.16867.1.S1_at1/111+13470386..13473432serine/threonine kinase, putative
LOC_Os01g23970OsAffx.28164.2.S1_at1/111+13470386..13473432serine/threonine kinase, putative
LOC_Os01g23980OsAffx.22848.4.S1_x_at1/111+13478759..13484717retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23980OsAffx.22848.3.S1_x_at1/111+13478759..13484717retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23990OsAffx.23364.1.S1_x_at9/111+13490800..13491351expressed protein
LOC_Os01g23990OsAffx.23364.1.S1_at9/111+13490800..13491351expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23363.1.S1_at--533--5971Chr01:13471120..13471144 (25 bp)
GAGGATCCTCGGAGTCCGGTGTAAC
LOC_Os01g23970
OsAffx.23363.1.S1_at--203--10571Chr01:13471166..13471190 (25 bp)
TTCTTCAAGGAGACCAGCACCACTA
LOC_Os01g23970
OsAffx.23363.1.S1_at--294--1511Chr01:13471181..13471205 (25 bp)
AGCACCACTATCAAGCTCAACATGC
LOC_Os01g23970
OsAffx.23363.1.S1_at--890--8391Chr01:13472177..13472201 (25 bp)
GGCCGTTTGACTACGAACCAAGACA
LOC_Os01g23970
OsAffx.23363.1.S1_at--1022--2751Chr01:13472212..13472236 (25 bp)
AAGACTTGCCCCAAATTCTGCACAG
LOC_Os01g23970
OsAffx.23363.1.S1_at--400--10591Chr01:13472227..13472251 (25 bp)
TTCTGCACAGGGATTCAAGGAGTTC
LOC_Os01g23970
OsAffx.23363.1.S1_at--564--9831Chr01:13472263..13472287 (25 bp)
TAAACTCATAGCATGCCTTCAGCAT
LOC_Os01g23970
OsAffx.23363.1.S1_at--442--911Chr01:13472300..13472324 (25 bp)
AGGCTCCTTGGGTGCTGCATCAAAA
LOC_Os01g23970
OsAffx.23363.1.S1_at--719--4931Chr01:13472367..13472387 (21 bp)
GCTTGGATGGCCTAATTTTCGATTT
LOC_Os01g23970
OsAffx.23363.1.S1_at--1053--8571Chr01:13472698..13472722 (25 bp)
TGGTATTGCTAGGATTTGCCTCTCC
LOC_Os01g23970
OsAffx.23363.1.S1_at--199--211Chr01:13472711..13472735 (25 bp)
ATTTGCCTCTCCAGTGTGACAGAAT
LOC_Os01g23970
Target Sequence 
GAGGATCCTCGGAGTCCGGTGTAACCTCCGTTACGAGAAGGATGTCTTCTTCAAGGAGACCAGCACCACTATCAAGCTCA
ACATGCCCAAAAAGTTATTGTTGCAGAGGGATCTAGTCATATTGGAAAGGGAAATCGTGAGTGAAAGCGATGAAAGATTT
TCACTGTTCAAGTTTTCTAAGATAAAAGATGCCACGGACAATTTCTCCAGGGAAAATAAGCTAGGAGAAGGTGGATTTGG
TCATGTTTACAAGGGCCGTTTGACTACGAACCAAGACATTGCAGTGAAAAGACTTGCCCCAAATTCTGCACAGGGATTCA
AGGAGTTCAAAAACGAAATTAAACTCATAGCATGCCTTCAGCATAGGAATCTTGTTAGGCTCCTTGGGTGCTGCATCAAA
AGCAAGGAGAGGATATTAGTCTATGAATATATGCCTAATGGAAGCTTGGATGGCCTAATTTTCGATTTTGGTATTGCTAG
GATTTGCCTCTCCAGTGTGACAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23363.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis