Browse Element(s) Details


OsAffx.28435.2.S1_s_at

Description tigr:9635.m01383
TID=OsAffx.28435.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g139901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13930OsAffx.10183.1.S1_at11/117+7964764..7966118F-box domain containing protein, expressed
LOC_Os07g13940OsAffx.5324.1.S1_at11/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13940OsAffx.5324.1.S1_x_at11/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13940Os.36218.2.S1_x_at3/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13950Os.30861.1.S1_at2/117+7971781..7974078hypothetical protein
LOC_Os07g13960OsAffx.32036.1.S1_at2/117+7976222..7977932hypothetical protein
LOC_Os07g13980Os.25696.2.S1_x_at11/117+7980847..7987587Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast precursor, putative, expressed
LOC_Os07g13980OsAffx.16251.1.S1_at11/117+7980847..7987587Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast precursor, putative, expressed
LOC_Os07g13990OsAffx.22409.1.S1_at11/117+7989621..7993123hypothetical protein
LOC_Os07g13990OsAffx.10179.1.S1_at11/117+7989621..7993123hypothetical protein
LOC_Os07g13990OsAffx.28435.2.S1_s_at1/117+7989621..7993123hypothetical protein
LOC_Os07g14000OsAffx.24637.1.S1_at10/117+7995445..7999788hypothetical protein
LOC_Os07g14000OsAffx.23361.2.S1_x_at2/117+7995445..7999788hypothetical protein
LOC_Os07g14000OsAffx.27394.1.S1_at1/117+7995445..7999788hypothetical protein
LOC_Os07g14000Os.13016.1.S1_a_at1/117+7995445..7999788hypothetical protein
LOC_Os07g14010NANA7+8000563..8002072retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14020OsAffx.32072.1.S1_at11/117+8003973..8005096hypothetical protein
LOC_Os07g14020OsAffx.32072.1.S1_x_at9/117+8003973..8005096hypothetical protein
LOC_Os07g14020OsAffx.32072.2.S1_x_at3/117+8003973..8005096hypothetical protein
LOC_Os07g14030OsAffx.28437.1.S1_s_at11/117+8007631..8008161Pathogenesis-related protein PRB1-3 precursor, putative
LOC_Os07g14030OsAffx.28437.3.S1_s_at1/117+8007631..8008161Pathogenesis-related protein PRB1-3 precursor, putative
LOC_Os07g14040Os.54287.1.S1_at2/117+8011433..8013743hypothetical protein
LOC_Os07g14050NANA7+8015154..8017947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14060Os.31497.2.S1_x_at1/117+8018079..8020852retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28435.2.S1_s_at--710--5991Chr07:7989644..7989668 (25 bp)
GAGACCACGATGACCCCTGGGACGT
LOC_Os07g13990
OsAffx.28435.2.S1_s_at--34--1871Chr07:7989572..7989596 (25 bp)
ACGACCACCGAGCTGGCGTCCTGGA
NONE
OsAffx.28435.2.S1_s_at--1015--8471Chr07:7989559..7989583 (25 bp)
TGGCGTCCTGGACCTATGGTTCCTC
NONE
OsAffx.28435.2.S1_s_at--476--3811Chr07:7989447..7989471 (25 bp)
CTGCCGTTGCCGTGGGACGCGGAAA
NONE
OsAffx.28435.2.S1_s_at--156--7391Chr07:7989336..7989360 (25 bp)
GTGATTCGGGTGTACGATCCGGCCA
NONE
OsAffx.28435.2.S1_s_at--1101--8431Chr07:7989316..7989340 (25 bp)
GGCCACCGGCGGTCAAACAGACGTG
NONE
OsAffx.28435.2.S1_s_at--1033--10691Chr07:7988568..7988592 (25 bp)
TTGCAACGCTTTGCGAGGGCACGAT
NONE
OsAffx.28435.2.S1_s_at--603--9311Chr07:7988544..7988568 (25 bp)
TCCCGGCCGAGCTGGTGCGAATATT
NONE
OsAffx.28435.2.S1_s_at--512--3891Chr07:7988533..7988557 (25 bp)
CTGGTGCGAATATTCGCGTCGGGAA
NONE
OsAffx.28435.2.S1_s_at--899--91Chr07:7988522..7988546 (25 bp)
ATTCGCGTCGGGAATGGTGAGACCA
NONE
OsAffx.28435.2.S1_s_at--613--2972Chr02:30283718..30283739 (22 bp)
AATGGTGAGACCACGCTCTAGTGTG
NONE
Target Sequence 
GAGACCACGATGACCCCTGGGACGTCACCGTCACCCTTGCCGAGCTGAGGGGCACCTTGGTGGTGGCCCACGACGACCAC
CGAGCTGGCGTCCTGGACCTATGGTTCCTCCTCGCCGGCGACGGCGACGGCGGCAAGGTTGGGCCGCAGCATTGGACGAA
GCTGTACACGGTGACCATGCCATACCACGCCCTCGGGCTGCCGTTGCCGTGGGACGCGGAAAGCGCGGAGCCGGCGGTGG
TGCTCGTCGACGACGGGAGGGTCGTCTTCTGGGTGTGGGCCAACGGCAGTTCAGAGCACGGCCGCGGCGTGATTCGGGTG
TACGATCCGGCCACCGGCGGTCAAACAGACGTGGCGGCGATGAGGGTTGCAACGCTTTGCGAGGGCACGATCCCGGCCGA
GCTGGTGCGAATATTCGCGTCGGGAATGGTGAGACCACGCTCTAGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28435.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis