Browse Element(s) Details


OsAffx.5324.1.S1_at

Description tigr:9635.m01377
TID=OsAffx.5324.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1394011/11Cytokinin-N-glucosyltransferase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13890Os.35797.1.S1_at11/117+7941060..7943204F-box domain containing protein, expressed
LOC_Os07g13900OsAffx.22410.1.S1_at11/117+7948931..7950466F-box domain containing protein
LOC_Os07g13910OsAffx.28434.1.S1_at11/117+7951250..7952616hypothetical protein
LOC_Os07g13920OsAffx.5322.1.S1_at11/117+7954360..7955484No apical meristem protein
LOC_Os07g13930OsAffx.10183.1.S1_at11/117+7964764..7966118F-box domain containing protein, expressed
LOC_Os07g13940OsAffx.5324.1.S1_at11/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13940OsAffx.5324.1.S1_x_at11/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13940Os.36218.2.S1_x_at3/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13950Os.30861.1.S1_at2/117+7971781..7974078hypothetical protein
LOC_Os07g13960OsAffx.32036.1.S1_at2/117+7976222..7977932hypothetical protein
LOC_Os07g13980Os.25696.2.S1_x_at11/117+7980847..7987587Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast precursor, putative, expressed
LOC_Os07g13980OsAffx.16251.1.S1_at11/117+7980847..7987587Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast precursor, putative, expressed
LOC_Os07g13990OsAffx.22409.1.S1_at11/117+7989621..7993123hypothetical protein
LOC_Os07g13990OsAffx.10179.1.S1_at11/117+7989621..7993123hypothetical protein
LOC_Os07g13990OsAffx.28435.2.S1_s_at1/117+7989621..7993123hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5324.1.S1_at--864--3971Chr07:7967942..7967966 (25 bp)
CGGTGCTGCGGAACATCCGGCGCCA
LOC_Os07g13940
OsAffx.5324.1.S1_at--212--6711Chr07:7967899..7967923 (25 bp)
GTTCGCCATCGGGCCGATGCACAGG
LOC_Os07g13940
OsAffx.5324.1.S1_at--170--1631Chr07:7967832..7967856 (25 bp)
AGCGGCTGCGTTGCGTGGCTGCACG
LOC_Os07g13940
OsAffx.5324.1.S1_at--700--8751Chr07:7967786..7967810 (25 bp)
TGTACGTGAGCCTCGGCAGCGTGGC
LOC_Os07g13940
OsAffx.5324.1.S1_at--212--6691Chr07:7967743..7967767 (25 bp)
GTTCGACGAAATGGCCCTTGGGCTC
LOC_Os07g13940
OsAffx.5324.1.S1_at--318--3451Chr07:7967713..7967737 (25 bp)
CAGTGGCGTCCCATTCCTCTGGGTC
LOC_Os07g13940
OsAffx.5324.1.S1_at--698--8931Chr07:7967642..7967666 (25 bp)
TGACTGAACCACTCACCGCCGTCGT
LOC_Os07g13940
OsAffx.5324.1.S1_at--266--7511Chr07:7967623..7967643 (21 bp)
GTGGACAACGGCATGGGAAAGCCAT
LOC_Os07g13940
OsAffx.5324.1.S1_at--238--3951Chr07:7967481..7967635 (25 bp)
CGGCATGGGAAAGCCATGCTTCGGC
LOC_Os07g13940
OsAffx.5324.1.S1_at--1108--2211Chr07:7967320..7967344 (25 bp)
ACAAGGCGCGTGGTCTCAAGGCGAA
LOC_Os07g13940
OsAffx.5324.1.S1_at--37--911Chr07:7967302..7967326 (25 bp)
AGGCGAAGGCAAGCAAGAGCGTGGA
LOC_Os07g13940
Target Sequence 
CGGTGCTGCGGAACATCCGGCGCCACCTGCCGAGGATCCCGGCGTTCGCCATCGGGCCGATGCACAGGCTGCTCGGCGCG
CCGGAGGAGCACGGCCTGCACGCGCCGGACAGCGGCTGCGTTGCGTGGCTGCACGCGCACTCGCCGCGGTCCGTGCTGTA
CGTGAGCCTCGGCAGCGTGGCGCGCATCGACCGCGAGGTGTTCGACGAAATGGCCCTTGGGCTCGCCGGCAGTGGCGTCC
CATTCCTCTGGGTCATCCGCCCAGGCTTCGTCACCGGCATCGTCTCCGACGCCCTGCCTCTGACTGAACCACTCACCGCC
GTCGTGGACAACGGCATGGGAAAGCCATGCTTCGGCGACCAGACGGTGAACGCGAGGTACGTGACGCACCAGTGGGGCGT
CGGACTGGAGCTCGGCGAGGTGTTCGACCGGGACCGCGTGGCCGAGGCGGTGAGGAAGCTGATGGTTGGGGAAGAAGGCG
CGGCCATGAGGGACAAGGCGCGTGGTCTCAAGGCGAAGGCAAGCAAGAGCGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis