Browse Element(s) Details


OsAffx.5322.1.S1_at

Description gb:NM_186813.1
DB_XREF= gi:34900711
TID=OsAffx.5322.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (P0418E08.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1392011/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13860Os.10827.1.S1_x_at4/117+7932428..7936008transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13860Os.46055.2.S1_x_at3/117+7932428..7936008transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13870Os.36460.2.S1_x_at11/117+7937240..7939620F-box domain containing protein, expressed
LOC_Os07g13870Os.36460.1.S1_at11/117+7937240..7939620F-box domain containing protein, expressed
LOC_Os07g13880OsAffx.16249.1.S1_at11/117+7939884..7940728Soluble starch synthase 2-3, chloroplast precursor, putative
LOC_Os07g13890Os.35797.1.S1_at11/117+7941060..7943204F-box domain containing protein, expressed
LOC_Os07g13900OsAffx.22410.1.S1_at11/117+7948931..7950466F-box domain containing protein
LOC_Os07g13910OsAffx.28434.1.S1_at11/117+7951250..7952616hypothetical protein
LOC_Os07g13920OsAffx.5322.1.S1_at11/117+7954360..7955484No apical meristem protein
LOC_Os07g13930OsAffx.10183.1.S1_at11/117+7964764..7966118F-box domain containing protein, expressed
LOC_Os07g13940OsAffx.5324.1.S1_at11/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13940OsAffx.5324.1.S1_x_at11/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13940Os.36218.2.S1_x_at3/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13950Os.30861.1.S1_at2/117+7971781..7974078hypothetical protein
LOC_Os07g13960OsAffx.32036.1.S1_at2/117+7976222..7977932hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5322.1.S1_at--394--2771Chr07:7954928..7954952 (25 bp)
AAGACGACGGTCGAGCACATGGCGC
LOC_Os07g13920
OsAffx.5322.1.S1_at--592--5991Chr07:7954884..7954908 (25 bp)
GAGACTGCTCTGTTCGATCTGGAGG
LOC_Os07g13920
OsAffx.5322.1.S1_at--877--4671Chr07:7954812..7954836 (25 bp)
GCGGCGGATCATGGCACCGATCAGA
LOC_Os07g13920
OsAffx.5322.1.S1_at--617--7351Chr07:7954776..7954800 (25 bp)
GTGACCGACATGGTGTTCCGTGATC
LOC_Os07g13920
OsAffx.5322.1.S1_at--500--5831Chr07:7954746..7954770 (25 bp)
GACCTGATCGCTGATGCTGGAGCTG
LOC_Os07g13920
OsAffx.5322.1.S1_at--202--7931Chr07:7954699..7954723 (25 bp)
GGATTGGTCTGAAGTCGCCGATCAG
LOC_Os07g13920
OsAffx.5322.1.S1_at--585--1371Chr07:7954676..7954700 (25 bp)
AGAGCTCCTTCTGTGTGATGGGCGA
LOC_Os07g13920
OsAffx.5322.1.S1_at--831--8871Chr07:7954661..7954685 (25 bp)
TGATGGGCGATGACTCTTCTCTGCT
LOC_Os07g13920
OsAffx.5322.1.S1_at--55--1731Chr07:7954598..7954622 (25 bp)
ACCAGCAGTTTGTGCGCGAGTGCGA
LOC_Os07g13920
OsAffx.5322.1.S1_at--548--9452Chr02:3691416..3691435 (20 bp)
TCGGCGGACAACCAGAACTGCGAGT
NONE
OsAffx.5322.1.S1_at--238--1051Chr07:7954424..7954448 (25 bp)
AGGTGCTTAGCTACATCGACTTCAG
LOC_Os07g13920
Target Sequence 
AAGACGACGGTCGAGCACATGGCGCGCCCCGGCGGGCTGAGGCGGAGACTGCTCTGTTCGATCTGGAGGTCGGGCCACCG
CCACCGCCACTGCTCGTTCCTCCTCCCGCGGCGGCGGCGGCGGATCATGGCACCGATCAGAGCTCCTCCGGTGTGACCGA
CATGGTGTTCCGTGATCTTCCCGACCTGATCGCTGATGCTGGAGCTGCTCTGCCCGATCAGAACCAACAGGATTGGTCTG
AAGTCGCCGATCAGAGCTCCTTCTGTGTGATGGGCGATGACTCTTCTCTGCTGCTCCCTGATCTTCCTGGGATGATTGAT
GACAATGAGCACCAGCAGTTTGTGCGCGAGTGCGACATGCCACACCTGTTCGTCCCGCAAGCAGAGGAAGCCATTGCTGG
TGGTGGTGCAGCATCGGCGCCATCGGCGGACAACCAGAACTGCGAGTTCAATGACGGCGAGGACATGGCATTGTCAGATT
TTGAGTTTCCGGAGAGTATTGATGAGGTGCTTAGCTACATCGACTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis