Browse Element(s) Details


Os.36460.2.S1_x_at

Description gb:NM_186805.1
DB_XREF= gi:34900695
TID=Os.36460.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.36460 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (P0418E08.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (P0418E08.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1387011/11F-box domain containing protein, expressed
LOC_Os07g098701/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13830Os.31430.1.S1_at11/117+7917666..7919483expressed protein
LOC_Os07g13840OsAffx.28433.1.S1_s_at11/117+7923924..7924856hypothetical protein
LOC_Os07g13840OsAffx.9066.1.S1_x_at1/117+7923924..7924856hypothetical protein
LOC_Os07g13850OsAffx.25936.7.S1_s_at11/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.1.S1_s_at11/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.5.S1_x_at11/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.2.S1_x_at5/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.1.S1_at1/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13860Os.10827.1.S1_x_at4/117+7932428..7936008transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13860Os.46055.2.S1_x_at3/117+7932428..7936008transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13870Os.36460.2.S1_x_at11/117+7937240..7939620F-box domain containing protein, expressed
LOC_Os07g13870Os.36460.1.S1_at11/117+7937240..7939620F-box domain containing protein, expressed
LOC_Os07g13880OsAffx.16249.1.S1_at11/117+7939884..7940728Soluble starch synthase 2-3, chloroplast precursor, putative
LOC_Os07g13890Os.35797.1.S1_at11/117+7941060..7943204F-box domain containing protein, expressed
LOC_Os07g13900OsAffx.22410.1.S1_at11/117+7948931..7950466F-box domain containing protein
LOC_Os07g13910OsAffx.28434.1.S1_at11/117+7951250..7952616hypothetical protein
LOC_Os07g13920OsAffx.5322.1.S1_at11/117+7954360..7955484No apical meristem protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36460.2.S1_x_at--894--6331Chr07:7938857..7938881 (25 bp)
GATCCAGTGTGTGAGGTTTTCGCAA
LOC_Os07g13870
Os.36460.2.S1_x_at--918--6891Chr07:7938786..7938810 (25 bp)
GTATCTTGATCCGAGCTGCACCAAT
LOC_Os07g13870
Os.36460.2.S1_x_at--361--3851Chr07:7938771..7938795 (25 bp)
CTGCACCAATGGAGTTGTCTTCGAA
LOC_Os07g13870
Os.36460.2.S1_x_at--256--9071Chr07:7938741..7938765 (25 bp)
TGCTTACTTCTTCTTGGATCACTGG
LOC_Os07g13870
Os.36460.2.S1_x_at--857--2291Chr07:7938715..7938739 (25 bp)
AAATGGATCCCTCCTACTATTTTGC
LOC_Os07g13870
Os.36460.2.S1_x_at--787--9891Chr07:7938701..7938725 (25 bp)
TACTATTTTGCTACGGGCTGCATAC
LOC_Os07g13870
Os.36460.2.S1_x_at--1029--8171Chr07:7938609..7938633 (25 bp)
GGAAGCGAATGGCACACTCAACTAT
LOC_Os07g13870
Os.36460.2.S1_x_at--1102--3191Chr07:7938591..7938615 (25 bp)
CAACTATGCTGACCTTACCGATCGT
LOC_Os07g13870
Os.36460.2.S1_x_at--188--9971Chr07:7938576..7938600 (25 bp)
TACCGATCGTCTTATGTTAGCCCAA
LOC_Os07g13870
Os.36460.2.S1_x_at--527--10591Chr07:7938510..7938534 (25 bp)
TTCTGCGGTGGACTTATGGTTTCTA
LOC_Os07g13870
Os.36460.2.S1_x_at--1115--7332Chr07:5247767..5247791 (25 bp)
GTGCAACCTTTGCTTGTGACGGATG
LOC_Os07g09870
Target Sequence 
GATCCAGTGTGTGAGGTTTTCGCAATCGGCGACATGAATGGACGGTGGAGGAAGATGGAGAGTCCACCGGGGTATCTTGA
TCCGAGCTGCACCAATGGAGTTGTCTTCGAAGGGGCTGCTTACTTCTTCTTGGATCACTGGCAAATGGATCCCTCCTACT
ATTTTGCTACGGGCTGCATACCTTCCTTCGACCTTGCGACGGAGCAGTGGAGCACGGCTCTCCAAGGGCCAGTAAACAGA
ATTCTTGAGGAAGCGAATGGCACACTCAACTATGCTGACCTTACCGATCGTCTTATGTTAGCCCAACTTGAAGGAACTTT
GTGTACAGCACATTTCAATGATCAAATTTCTGCGGTGGACTTATGGTTTCTAGTTGATTTTGAGAATGGTATGTGGTCCA
AAGAATATAGGATAAATGTTGAATTTGCTTTTGATGGTTTTGGAGATGGTGTGCAACCTTTGCTTGTGACGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36460.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis