Browse Element(s) Details


OsAffx.28433.1.S1_s_at

Description gb:NM_186803.1
DB_XREF= gi:34900691
GEN=P0418E08.18
TID=OsAffx.28433.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0418E08.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1384011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13770Os.14631.1.S1_at11/117+7898877..7900719UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13780NANA7+7902088..7902684Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13790OsAffx.5320.1.S1_at10/117+7902982..7904224hypothetical protein
LOC_Os07g13800OsAffx.16247.1.S1_at11/117+7905788..7907712UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13810Os.36218.2.S1_x_at11/117+7910258..7912076UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13810Os.36218.1.S1_at10/117+7910258..7912076UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13810OsAffx.5324.1.S1_x_at2/117+7910258..7912076UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13830Os.31430.1.S1_at11/117+7917666..7919483expressed protein
LOC_Os07g13840OsAffx.28433.1.S1_s_at11/117+7923924..7924856hypothetical protein
LOC_Os07g13840OsAffx.9066.1.S1_x_at1/117+7923924..7924856hypothetical protein
LOC_Os07g13850OsAffx.25936.7.S1_s_at11/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.1.S1_s_at11/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.5.S1_x_at11/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.2.S1_x_at5/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.1.S1_at1/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13860Os.10827.1.S1_x_at4/117+7932428..7936008transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13860Os.46055.2.S1_x_at3/117+7932428..7936008transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13870Os.36460.2.S1_x_at11/117+7937240..7939620F-box domain containing protein, expressed
LOC_Os07g13870Os.36460.1.S1_at11/117+7937240..7939620F-box domain containing protein, expressed
LOC_Os07g13880OsAffx.16249.1.S1_at11/117+7939884..7940728Soluble starch synthase 2-3, chloroplast precursor, putative
LOC_Os07g13890Os.35797.1.S1_at11/117+7941060..7943204F-box domain containing protein, expressed
LOC_Os07g13900OsAffx.22410.1.S1_at11/117+7948931..7950466F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28433.1.S1_s_at--27--5771Chr07:7924094..7924118 (25 bp)
GACGTCTGCATCGTGGACGTGTCCT
LOC_Os07g13840
OsAffx.28433.1.S1_s_at--1097--2411Chr07:7924401..7924425 (25 bp)
AAAAGCCATGTCGTGGGCCGGGCCT
LOC_Os07g13840
OsAffx.28433.1.S1_s_at--1125--10091Chr07:7924441..7924465 (25 bp)
TATGGCCATCTATAGTGTCCACCAC
LOC_Os07g13840
OsAffx.28433.1.S1_s_at--1105--9551Chr07:7924534..7924558 (25 bp)
TCTTCGTCCCCGACTGGGTGAACCA
LOC_Os07g13840
OsAffx.28433.1.S1_s_at--965--4091Chr07:7924597..7924621 (25 bp)
CGACGGGAGGAGATCAGTACAAGCT
LOC_Os07g13840
OsAffx.28433.1.S1_s_at--987--2211Chr07:7924615..7924639 (25 bp)
ACAAGCTGTTGTGCATCCGCATGGA
LOC_Os07g13840
OsAffx.28433.1.S1_s_at--290--5011Chr07:7924633..7924657 (25 bp)
GCATGGACCGCGTACTGCAGGTTTG
LOC_Os07g13840
OsAffx.28433.1.S1_s_at--787--9911Chr07:7924645..7924669 (25 bp)
TACTGCAGGTTTGCTCGGTGCTCAC
LOC_Os07g13840
OsAffx.28433.1.S1_s_at--496--8351Chr07:7924674..7924698 (25 bp)
GGCGGCAATGGCATCAACAGCGGCA
LOC_Os07g13840
OsAffx.28433.1.S1_s_at--67--6251Chr07:7924708..7924732 (25 bp)
GATGGAGGAAGGTACCGAGCCCACC
LOC_Os07g13840
OsAffx.28433.1.S1_s_at--393--9891Chr07:7924785..7924809 (25 bp)
TACTTCGTGCTGTCTATGGCGTTCA
LOC_Os07g13840
Target Sequence 
GACGTCTGCATCGTGGACGTGTCCTCCGTCCCTATACTTTGTATGTCGGGCCTGGCCTGCTGGCCCATCGTGCCGGGCTG
GCCCGACCGTGCCCAGTGTGCCGGTGGGGAGGCCCAGGCACAGCCCAGCGGTCGGGCCGGGCCAAAAAGCCATGTCGTGG
GCCGGGCCTTCGGGCCCCGGGCCTTATGGCCATCTATAGTGTCCACCACCACCACCACGGCGCACCGCGGCGTGGCTCTC
CTCGTCGGCAGCAGCGACCGGTTCGTCCGCCGCCGTCTCTTCGTCCCCGACTGGGTGAACCACCCCACCAACTGCTCCTT
CGCGCTCGGGCGGACCGTGTCGACGGGAGGAGATCAGTACAAGCTGTTGTGCATCCGCATGGACCGCGTACTGCAGGTTT
GCTCGGTGCTCACCCTCGGCGGCAATGGCATCAACAGCGGCAGCTTCGCGCGATGGAGGAAGGTACCGAGCCCACCCCAG
AACGTCTTCACGGGGCGCAGGAGCGTGGCCATCGTCGACGGGGTCGCCTACTTCGTGCTGTCTATGGCGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28433.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis