Browse Element(s) Details


Os.35797.1.S1_at

Description gb:AK065752.1
DB_XREF= gi:32975770
TID=Os.35797.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35797 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0418E08.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037K22, full insert sequence.
FL= gb:AK065752.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1389011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13830Os.31430.1.S1_at11/117+7917666..7919483expressed protein
LOC_Os07g13840OsAffx.28433.1.S1_s_at11/117+7923924..7924856hypothetical protein
LOC_Os07g13840OsAffx.9066.1.S1_x_at1/117+7923924..7924856hypothetical protein
LOC_Os07g13850OsAffx.25936.7.S1_s_at11/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.1.S1_s_at11/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.5.S1_x_at11/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.2.S1_x_at5/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.1.S1_at1/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13860Os.10827.1.S1_x_at4/117+7932428..7936008transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13860Os.46055.2.S1_x_at3/117+7932428..7936008transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13870Os.36460.2.S1_x_at11/117+7937240..7939620F-box domain containing protein, expressed
LOC_Os07g13870Os.36460.1.S1_at11/117+7937240..7939620F-box domain containing protein, expressed
LOC_Os07g13880OsAffx.16249.1.S1_at11/117+7939884..7940728Soluble starch synthase 2-3, chloroplast precursor, putative
LOC_Os07g13890Os.35797.1.S1_at11/117+7941060..7943204F-box domain containing protein, expressed
LOC_Os07g13900OsAffx.22410.1.S1_at11/117+7948931..7950466F-box domain containing protein
LOC_Os07g13910OsAffx.28434.1.S1_at11/117+7951250..7952616hypothetical protein
LOC_Os07g13920OsAffx.5322.1.S1_at11/117+7954360..7955484No apical meristem protein
LOC_Os07g13930OsAffx.10183.1.S1_at11/117+7964764..7966118F-box domain containing protein, expressed
LOC_Os07g13940OsAffx.5324.1.S1_at11/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13940OsAffx.5324.1.S1_x_at11/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13940Os.36218.2.S1_x_at3/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35797.1.S1_at--372--9731Chr07:7942619..7942643 (25 bp)
TAATAGACTATGAGACCCGCACCTG
LOC_Os07g13890
Os.35797.1.S1_at--818--5971Chr07:7942630..7942654 (25 bp)
GAGACCCGCACCTGGATTAAACAAT
LOC_Os07g13890
Os.35797.1.S1_at--944--10731Chr07:7942667..7942691 (25 bp)
TTGAATCATTCGTTCCTGTTAGGGA
LOC_Os07g13890
Os.35797.1.S1_at--598--6891Chr07:7942738..7942762 (25 bp)
GTATGGCTAGGATCGACCGGACTGC
LOC_Os07g13890
Os.35797.1.S1_at--469--5831Chr07:7942752..7942776 (25 bp)
GACCGGACTGCTACTCATATATGAT
LOC_Os07g13890
Os.35797.1.S1_at--505--7151Chr07:7942814..7942838 (25 bp)
GTCTTTCTGAAGTTGGTCTGTACAC
LOC_Os07g13890
Os.35797.1.S1_at--1088--10711Chr07:7942898..7942922 (25 bp)
TTGCTACTCTCTTCAAATGCCAGTT
LOC_Os07g13890
Os.35797.1.S1_at--523--3031Chr07:7942913..7942937 (25 bp)
AATGCCAGTTAATCAGCTTTTAGAA
LOC_Os07g13890
Os.35797.1.S1_at--1115--10171Chr07:7942962..7942986 (25 bp)
TATACTTGGTCGGATCCTTGTGTCT
LOC_Os07g13890
Os.35797.1.S1_at--274--3971Chr07:7942972..7942996 (25 bp)
CGGATCCTTGTGTCTTGTTGTATTG
LOC_Os07g13890
Os.35797.1.S1_at--1080--3751Chr07:7943037..7943061 (25 bp)
CTCTCTCTCATTTTGTACTGTCTTG
LOC_Os07g13890
Target Sequence 
TAATAGACTATGAGACCCGCACCTGGATTAAACAATATAGCATTCAAATTGAATCATTCGTTCCTGTTAGGGAGTNCAAG
GTAAAGCCNCTGCTGGTATTGGATGATGGGAGGATANTCGTATGGCTAGGATCGACCGGACTGCTACTCATATATGATCC
NAGAACCAGCACTTTTGCAGAAGTGGAGATGAGACGTCTTTCTGAAGTTGGTCTGTACACNGGAAGCGTACTGAGTTTAT
AAAATGGNGATGTGGTGTAGTATTGTACTCCATNATGTTTTGCTACTCTCTTCAAATGCCAGTTAATCAGCTTTTAGAAA
TGATCTTTGGGCACNATCATTAATATACTTGGTCGGATCCTTGTGTCTTGTTGTATTGGGGCCTGTAAGATCATTGTAAA
TTCTTGAAGANGCTATATCTCTCTCTCATTTTGTACTGTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis