Browse Element(s) Details


OsAffx.5320.1.S1_at

Description tigr:9635.m01362
TID=OsAffx.5320.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1379010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13740NANA7+7882736..7883746hypothetical protein
LOC_Os07g13750OsAffx.16111.1.S1_at1/117+7884765..7891981retrotransposon protein, putative, unclassified
LOC_Os07g13750OsAffx.11259.1.S1_at1/117+7884765..7891981retrotransposon protein, putative, unclassified
LOC_Os07g13750OsAffx.22699.1.S1_x_at1/117+7884765..7891981retrotransposon protein, putative, unclassified
LOC_Os07g13760NANA7+7892947..7895506hypothetical protein
LOC_Os07g13770Os.14631.1.S1_at11/117+7898877..7900719UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13780NANA7+7902088..7902684Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13790OsAffx.5320.1.S1_at10/117+7902982..7904224hypothetical protein
LOC_Os07g13800OsAffx.16247.1.S1_at11/117+7905788..7907712UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13810Os.36218.2.S1_x_at11/117+7910258..7912076UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13810Os.36218.1.S1_at10/117+7910258..7912076UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13810OsAffx.5324.1.S1_x_at2/117+7910258..7912076UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13830Os.31430.1.S1_at11/117+7917666..7919483expressed protein
LOC_Os07g13840OsAffx.28433.1.S1_s_at11/117+7923924..7924856hypothetical protein
LOC_Os07g13840OsAffx.9066.1.S1_x_at1/117+7923924..7924856hypothetical protein
LOC_Os07g13850OsAffx.25936.7.S1_s_at11/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.1.S1_s_at11/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.5.S1_x_at11/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.2.S1_x_at5/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13850OsAffx.25936.1.S1_at1/117+7925239..7928754transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5320.1.S1_at--116--10691NONE
TTGCCAATGGATGGTGTTGCTCCCA
NONE
OsAffx.5320.1.S1_at--467--8811Chr07:7903234..7903258 (25 bp)
TGTTGCTCCCAGTGTTCATGGAGGA
LOC_Os07g13790
OsAffx.5320.1.S1_at--825--7531Chr07:7903178..7903202 (25 bp)
GTGGCTACGCTGTCGTCACCAAGCT
LOC_Os07g13790
OsAffx.5320.1.S1_at--143--811Chr07:7903130..7903154 (25 bp)
ATGGGTTCCAGCTCTTCGAATGTGC
LOC_Os07g13790
OsAffx.5320.1.S1_at--137--4831Chr07:7903120..7903144 (25 bp)
GCTCTTCGAATGTGCTGATCACCAC
LOC_Os07g13790
OsAffx.5320.1.S1_at--1081--8831Chr07:7903105..7903129 (25 bp)
TGATCACCACGCCATTGGAGTTCCT
LOC_Os07g13790
OsAffx.5320.1.S1_at--733--8551Chr07:7903090..7903114 (25 bp)
TGGAGTTCCTCACCGTTTCGGCGAT
LOC_Os07g13790
OsAffx.5320.1.S1_at--707--5951Chr07:7903063..7903087 (25 bp)
GAGCAAGCACTTCGAAAACCAGTTC
LOC_Os07g13790
OsAffx.5320.1.S1_at--415--2371Chr07:7903048..7903072 (25 bp)
AAACCAGTTCATCACGGTGCTGAAA
LOC_Os07g13790
OsAffx.5320.1.S1_at--460--5511Chr07:7903027..7903051 (25 bp)
GAAAAGGTCCCTTACTCGCAGTGGT
LOC_Os07g13790
OsAffx.5320.1.S1_at--64--2011Chr07:7903014..7903038 (25 bp)
ACTCGCAGTGGTGGTAGCTCCTTCA
LOC_Os07g13790
Target Sequence 
TTGCCAATGGATGGTGTTGCTCCCAGTGTTCATGGAGGAGAGCCTGTGGAGTGGGCCAGTGGCGAGCACGGTGGCTACGC
TGTCGTCACCAAGCTCGCCGTGGACCCTCTCGAGCTCCATGGGTTCCAGCTCTTCGAATGTGCTGATCACCACGCCATTG
GAGTTCCTCACCGTTTCGGCGATCCGAGCAAGCACTTCGAAAACCAGTTCATCACGGTGCTGAAAAGGTCCCTTACTCGC
AGTGGTGGTAGCTCCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis