Browse Element(s) Details


Os.25696.2.S1_x_at

Description gb:NM_186821.1
DB_XREF= gi:34900727
GEN=P0418E08.37
TID=Os.25696.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25696 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast precursor (P0418E08.37), mRNA.
PROD=putative Glucose-1-phosphate adenylyltransferaselarge subunit 2, chloroplast precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1398011/11Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13930OsAffx.10183.1.S1_at11/117+7964764..7966118F-box domain containing protein, expressed
LOC_Os07g13940OsAffx.5324.1.S1_at11/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13940OsAffx.5324.1.S1_x_at11/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13940Os.36218.2.S1_x_at3/117+7967241..7968716Cytokinin-N-glucosyltransferase 1, putative, expressed
LOC_Os07g13950Os.30861.1.S1_at2/117+7971781..7974078hypothetical protein
LOC_Os07g13960OsAffx.32036.1.S1_at2/117+7976222..7977932hypothetical protein
LOC_Os07g13980Os.25696.2.S1_x_at11/117+7980847..7987587Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast precursor, putative, expressed
LOC_Os07g13980OsAffx.16251.1.S1_at11/117+7980847..7987587Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast precursor, putative, expressed
LOC_Os07g13990OsAffx.22409.1.S1_at11/117+7989621..7993123hypothetical protein
LOC_Os07g13990OsAffx.10179.1.S1_at11/117+7989621..7993123hypothetical protein
LOC_Os07g13990OsAffx.28435.2.S1_s_at1/117+7989621..7993123hypothetical protein
LOC_Os07g14000OsAffx.24637.1.S1_at10/117+7995445..7999788hypothetical protein
LOC_Os07g14000OsAffx.23361.2.S1_x_at2/117+7995445..7999788hypothetical protein
LOC_Os07g14000OsAffx.27394.1.S1_at1/117+7995445..7999788hypothetical protein
LOC_Os07g14000Os.13016.1.S1_a_at1/117+7995445..7999788hypothetical protein
LOC_Os07g14010NANA7+8000563..8002072retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14020OsAffx.32072.1.S1_at11/117+8003973..8005096hypothetical protein
LOC_Os07g14020OsAffx.32072.1.S1_x_at9/117+8003973..8005096hypothetical protein
LOC_Os07g14020OsAffx.32072.2.S1_x_at3/117+8003973..8005096hypothetical protein
LOC_Os07g14030OsAffx.28437.1.S1_s_at11/117+8007631..8008161Pathogenesis-related protein PRB1-3 precursor, putative
LOC_Os07g14030OsAffx.28437.3.S1_s_at1/117+8007631..8008161Pathogenesis-related protein PRB1-3 precursor, putative
LOC_Os07g14040Os.54287.1.S1_at2/117+8011433..8013743hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019252biological_processstarch biosynthesis
GO:0010170cellular_componentglucose-1-phosphate adenylyltransferase complex
GO:0008878molecular_functionglucose-1-phosphate adenylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25696.2.S1_x_at--14--2991Chr07:7984844..7985028 (25 bp)
AATGTGCAGGCCTATCTATTTGATG
LOC_Os07g13980
Os.25696.2.S1_x_at--950--8231Chr07:7984779..7984803 (25 bp)
GGCAAATCTTGCTCTCACAGATCAG
LOC_Os07g13980
Os.25696.2.S1_x_at--647--1271Chr07:7984677..7984785 (25 bp)
AGATCAGTCGCCAAACTTCTATTTT
LOC_Os07g13980
Os.25696.2.S1_x_at--77--10211Chr07:7984658..7984682 (25 bp)
TATTTTTATGATCCTGTGAAGCCCA
LOC_Os07g13980
Os.25696.2.S1_x_at--1067--2651Chr07:7984640..7984664 (25 bp)
AAGCCCATATTCACATCTCCTAGAT
LOC_Os07g13980
Os.25696.2.S1_x_at--195--9491Chr07:7984625..7984649 (25 bp)
TCTCCTAGATTTTTACCTCCAACGA
LOC_Os07g13980
Os.25696.2.S1_x_at--740--7891Chr07:7984507..7984531 (25 bp)
GGTTCTGAACTCTATAGTTTCCCAT
LOC_Os07g13980
Os.25696.2.S1_x_at--489--10291Chr07:7984490..7984514 (25 bp)
TTTCCCATGGGTGCTTTCTAACAGA
LOC_Os07g13980
Os.25696.2.S1_x_at--950--5271Chr07:7984467..7984491 (25 bp)
GAATGTAGTGTTGATCGCTCTGTTA
LOC_Os07g13980
Os.25696.2.S1_x_at--111--4131Chr07:7984452..7984476 (25 bp)
CGCTCTGTTATTGGTGTCCGTTCAA
LOC_Os07g13980
Os.25696.2.S1_x_at--1042--7671Chr07:7983000..7983024 (25 bp)
GGGTTTCTACATTCGTTCTGGGATA
LOC_Os07g13980
Target Sequence 
AATGTGCAGGCCTATCTATTTGATGGTTACTGGGAAGATATTGGGACAATAAAGTCATTCTTTGAGGCAAATCTTGCTCT
CACAGATCAGTCGCCAAACTTCTATTTTTATGATCCTGTGAAGCCCATATTCACATCTCCTAGATTTTTACCTCCAACGA
AAGTAGAAAACTGCAAGGTTCTGAACTCTATAGTTTCCCATGGGTGCTTTCTAACAGAATGTAGTGTTGATCGCTCTGTT
ATTGGTGTCCGTTCAAGATTAGAACCGGGGGTGCAGCTGAAGGACACCATGATGATGGGGGCAGATTACTATCAGACTGA
AGCTGAGAGATTTTCTGAATTGTCTGATGGAAAAGTACCAGTTGGCGTTGGAGAAAACACCATAATAAGGAACTGTATCA
TCGACAAGAATGCTCGAATTGGAAAGAATGTAATGATTATGAACTCACAGAATGTGCAAGAAGCAGAGAGACCATTAGAG
GGTTTCTACATTCGTTCTGGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25696.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis