Browse Element(s) Details


OsAffx.8513.2.S1_at

Description tigr:9638.m00474
TID=OsAffx.8513.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=alternative oxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g056206/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05590OsAffx.20749.1.S1_at11/1110+2764618..2767273F-box domain containing protein
LOC_Os10g05600Os.56354.1.S1_at10/1110+2778783..2780822Thaumatin family protein, expressed
LOC_Os10g05610OsAffx.6584.1.S1_at11/1110+2786076..2786484hypothetical protein
LOC_Os10g05620OsAffx.8513.1.S1_s_at11/1110+2788683..2791653transposon protein, putative, unclassified
LOC_Os10g05620OsAffx.8513.2.S1_at6/1110+2788683..2791653transposon protein, putative, unclassified
LOC_Os10g05630NANA10+2797727..2797981hypothetical protein
LOC_Os10g05650OsAffx.26144.1.S1_x_at11/1110+2800492..2803771transposon protein, putative, Mutator sub-class
LOC_Os10g05650OsAffx.26144.3.S1_s_at11/1110+2800492..2803771transposon protein, putative, Mutator sub-class
LOC_Os10g05650OsAffx.26144.3.S1_at8/1110+2800492..2803771transposon protein, putative, Mutator sub-class
LOC_Os10g05660NANA10+2813311..2814946Thaumatin-like protein 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8513.2.S1_at--473--7491Chr10:2790166..2790190 (25 bp)
GTGGTGTTGATGAGGTAGTCGGAGA
LOC_Os10g05620
OsAffx.8513.2.S1_at--55--10012Chr04:27511377..27511400 (24 bp)
TAGTCGGAGAGGAAGGCCCGGGACT
NONE
OsAffx.8513.2.S1_at--318--2952Chr04:27511388..27511412 (25 bp)
AAGGCCCGGGACTGAGCCAGCGCCA
NONE
OsAffx.8513.2.S1_at--1028--3971Chr10:2790098..2790122 (25 bp)
CGGTGGCTGGATACGCGCGCTGTTA
LOC_Os10g05620
OsAffx.8513.2.S1_at--146--8451NONE
GGCCAAGCTGAGGTGCAACGATTTT
NONE
OsAffx.8513.2.S1_at--790--4391NONE
GCCAAGCTGAGGTGCAACGATTTTA
NONE
OsAffx.8513.2.S1_at--710--3231NONE
CAAGCTGAGGTGCAACGATTTTACA
NONE
OsAffx.8513.2.S1_at--399--1611NONE
AGCTGAGGTGCAACGATTTTACAAT
NONE
OsAffx.8513.2.S1_at--254--4751NONE
GCTGAGGTGCAACGATTTTACAATT
NONE
OsAffx.8513.2.S1_at--579--18710Chr11:3897638..3897661 (24 bp)
ACGATTTTACAATTGTGGCAACATT
NONE
OsAffx.8513.2.S1_at--393--7532Chr09:13969925..13969971 (25 bp)
GTGGCAACATTATTGATGTCACGAT
NONE
Target Sequence 
GTGGTGTTGATGAGGTAGTCGGAGAGGAAGGCCCGGGACTGAGCCAGCGCCACCAGCTTCGAGCACAGCGGTGGCTGGAT
ACGCGCGCTGTTAGAGGAGGCCGAGAACGAGCAGATGCACCTCATGACCTTCATGGAGGTGGCCAAGCTGAGGTGCAACG
ATTTTACAATTGTGGCAACATTATTGATGTCACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8513.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis