Browse Element(s) Details


OsAffx.6584.1.S1_at

Description tigr:9638.m00473
TID=OsAffx.6584.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0561011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05590OsAffx.20749.1.S1_at11/1110+2764618..2767273F-box domain containing protein
LOC_Os10g05600Os.56354.1.S1_at10/1110+2778783..2780822Thaumatin family protein, expressed
LOC_Os10g05610OsAffx.6584.1.S1_at11/1110+2786076..2786484hypothetical protein
LOC_Os10g05620OsAffx.8513.1.S1_s_at11/1110+2788683..2791653transposon protein, putative, unclassified
LOC_Os10g05620OsAffx.8513.2.S1_at6/1110+2788683..2791653transposon protein, putative, unclassified
LOC_Os10g05630NANA10+2797727..2797981hypothetical protein
LOC_Os10g05650OsAffx.26144.1.S1_x_at11/1110+2800492..2803771transposon protein, putative, Mutator sub-class
LOC_Os10g05650OsAffx.26144.3.S1_s_at11/1110+2800492..2803771transposon protein, putative, Mutator sub-class
LOC_Os10g05650OsAffx.26144.3.S1_at8/1110+2800492..2803771transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6584.1.S1_at--1007--9251Chr10:2786163..2786187 (25 bp)
TCCTCGGCGACGGATGACGGGAAGA
LOC_Os10g05610
OsAffx.6584.1.S1_at--554--671Chr10:2786176..2786200 (25 bp)
ATGACGGGAAGACGGCGTACGGTCA
LOC_Os10g05610
OsAffx.6584.1.S1_at--31--9931Chr10:2786193..2786416 (25 bp)
TACGGTCATCGGGAAGATCGAATCA
LOC_Os10g05610
OsAffx.6584.1.S1_at--443--3551Chr10:2786199..2786422 (25 bp)
CATCGGGAAGATCGAATCAGGGCCA
LOC_Os10g05610
OsAffx.6584.1.S1_at--976--8171Chr10:2786403..2786427 (25 bp)
GGAAGATCGAATCAGGGCCAGTCCT
LOC_Os10g05610
OsAffx.6584.1.S1_at--1052--2791Chr10:2786405..2786429 (25 bp)
AAGATCGAATCAGGGCCAGTCCTGA
LOC_Os10g05610
OsAffx.6584.1.S1_at--1066--9331Chr10:2786409..2786433 (25 bp)
TCGAATCAGGGCCAGTCCTGACATT
LOC_Os10g05610
OsAffx.6584.1.S1_at--181--5251Chr10:2786411..2786435 (25 bp)
GAATCAGGGCCAGTCCTGACATTTT
LOC_Os10g05610
OsAffx.6584.1.S1_at--1123--9631Chr10:2786414..2786438 (25 bp)
TCAGGGCCAGTCCTGACATTTTGGA
LOC_Os10g05610
OsAffx.6584.1.S1_at--312--8953Chr12:18039509..18039533 (25 bp)
TGACATTTTGGAGGCCCTAGGCAGA
NONE
OsAffx.6584.1.S1_at--603--3592Chr12:18039512..18039536 (25 bp)
CATTTTGGAGGCCCTAGGCAGACTT
NONE
Target Sequence 
TCCTCGGCGACGGATGACGGGAAGACGGCGTACGGTCATCGGGAAGATCGAATCAGGGCCAGTCCTGACATTTTGGAGGC
CCTAGGCAGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis