Browse Element(s) Details


Os.56354.1.S1_at

Description gb:AK109913.1
DB_XREF= gi:32995122
TID=Os.56354.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56354 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-A03, full insert sequence.
FL= gb:AK109913.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0560010/11Thaumatin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05580OsAffx.6583.1.S1_at11/1110+2757183..2758690hypothetical protein
LOC_Os10g05590OsAffx.20749.1.S1_at11/1110+2764618..2767273F-box domain containing protein
LOC_Os10g05600Os.56354.1.S1_at10/1110+2778783..2780822Thaumatin family protein, expressed
LOC_Os10g05610OsAffx.6584.1.S1_at11/1110+2786076..2786484hypothetical protein
LOC_Os10g05620OsAffx.8513.1.S1_s_at11/1110+2788683..2791653transposon protein, putative, unclassified
LOC_Os10g05620OsAffx.8513.2.S1_at6/1110+2788683..2791653transposon protein, putative, unclassified
LOC_Os10g05630NANA10+2797727..2797981hypothetical protein
LOC_Os10g05650OsAffx.26144.1.S1_x_at11/1110+2800492..2803771transposon protein, putative, Mutator sub-class
LOC_Os10g05650OsAffx.26144.3.S1_s_at11/1110+2800492..2803771transposon protein, putative, Mutator sub-class
LOC_Os10g05650OsAffx.26144.3.S1_at8/1110+2800492..2803771transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56354.1.S1_at--1126--2671Chr10:2779319..2779342 (24 bp)
AAGCGGCAGCCAGAAGTCGACGACG
LOC_Os10g05600
Os.56354.1.S1_at--1008--8131Chr10:2779151..2779175 (25 bp)
GGACACCAGCATGCCGATGCCGATG
LOC_Os10g05600
Os.56354.1.S1_at--619--5071Chr10:2779080..2779104 (25 bp)
GCAGCGAGACGTGGATCGCCAACAT
LOC_Os10g05600
Os.56354.1.S1_at--461--7511Chr10:2779070..2779094 (25 bp)
GTGGATCGCCAACATGGCCACCGGC
LOC_Os10g05600
Os.56354.1.S1_at--707--4571Chr10:2779000..2779024 (25 bp)
GCGCTGGCGCTGTTCTTGGTCCACG
LOC_Os10g05600
Os.56354.1.S1_at--779--4331Chr10:2778939..2778963 (25 bp)
CCATGTCGGCGCCATTGTAGTAGTA
LOC_Os10g05600
Os.56354.1.S1_at--33--3531Chr10:2778898..2778922 (25 bp)
CATGAGACGATGTGTTGACTAGTGT
LOC_Os10g05600
Os.56354.1.S1_at--856--10251NONE
TTTGATAAGCTTTGTTGTTGTACTG
NONE
Os.56354.1.S1_at--140--10071Chr10:2778828..2778852 (25 bp)
TAGTGGTAGACTGTATCGGTTGTAC
LOC_Os10g05600
Os.56354.1.S1_at--439--5731Chr10:2778820..2778844 (25 bp)
GACTGTATCGGTTGTACGCTGTAGA
LOC_Os10g05600
Os.56354.1.S1_at--295--6991Chr10:2778807..2778831 (25 bp)
GTACGCTGTAGATTGTTGATTAATT
LOC_Os10g05600
Target Sequence 
AAGCGGCAGCCAGAAGTCGACGACGGCGACGCCGACGCCGGCGGCGATGATGCCGGGGACGGGGACGCCGACGACGCCAA
CGACGGCGACGGCGATGCCTGGGGCGACGATGCCCGGGACGGCGACGGCGACGACGATGCCGGGGACGACGTTCACGGAC
GCCGTCCCGGACACCAGCATGCCGATGCCGATGGGCGGCGACGCCGGCGGCGGCGGCGAAGAGGGCGTGGTGCTGAGCGG
CAGCGAGACGTGGATCGCCAACATGGCCACCGGCGAGCTGACGGCGGCGGCGTCCCTGTCCCGGCCGTCGCCCGCCGCGG
CGCTGGCGCTGTTCTTGGTCCACGCCCTGCGGCTGCTCGTGCTCCGGTGATGCCCGGCGGCCATGTCGGCGCCATTGTAG
TAGTAACAAAAACATTTTAGTCATGAGACGATGTGTTGACTAGTGTGAGTGGGGGTATTTTTGATAAGCTTTGTTGTTGT
ACTGTAGGGGGTAGTGGTAGACTGTATCGGTTGTACGCTGTAGATTGTTGATTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis