Browse Element(s) Details


Os.54723.1.S1_at

Description gb:AK106600.1
DB_XREF= gi:32991809
TID=Os.54723.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54723 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-B06, full insert sequence.
FL= gb:AK106600.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g272102/11expressed protein
LOC_Os03g251402/11Peptidylprolyl isomerase PASTICCINO1, putative, expressed
LOC_Os05g392401/11Ammonium transporter 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27150OsAffx.12219.1.S1_at11/112+15975786..15976337hypothetical protein
LOC_Os02g27160NANA2+15981181..15984321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g27170OsAffx.24448.1.S1_at11/112+15987487..15988863hypothetical protein
LOC_Os02g27180NANA2+15989770..15990517hypothetical protein
LOC_Os02g27190NANA2+15994843..15995706hypothetical protein
LOC_Os02g27200Os.27363.1.S1_at11/112+15996166..15999155FAD binding domain containing protein, expressed
LOC_Os02g27210OsAffx.24449.1.S1_at11/112+16000553..16003428expressed protein
LOC_Os02g27210Os.54723.1.S1_at2/112+16000553..16003428expressed protein
LOC_Os02g27210Os.26894.1.A1_x_at1/112+16000553..16003428expressed protein
LOC_Os02g27210OsAffx.20993.1.S1_at1/112+16000553..16003428expressed protein
LOC_Os02g27220Os.46339.1.S1_at11/112+16003639..16008412protein phosphatase 2c, putative, expressed
LOC_Os02g27220Os.9705.1.S1_at11/112+16003639..16008412protein phosphatase 2c, putative, expressed
LOC_Os02g27230NANA2+16015719..16021663retrotransposon protein, putative, unclassified
LOC_Os02g27240Os.28943.1.S1_x_at2/112+16022284..16024758retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0009611biological_processresponse to wounding
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009790biological_processembryonic development
GO:0009826biological_processunidimensional cell growth
GO:0015696biological_processammonium transport
GO:0030154biological_processcell differentiation
GO:0048364biological_processroot development
GO:0048366biological_processleaf development
GO:0005634cellular_componentnucleus
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
GO:0008519molecular_functionammonium transporter activity
GO:0015398molecular_functionhigh affinity ammonium transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54723.1.S1_at--590--3111Chr09:976955..976979 (25 bp)
AATTTCGCTCATGGGTCATTTTAGT
NONE
Os.54723.1.S1_at--614--77924Chr12:17059729..17059753 (25 bp)
GGTCATTTTAGTCCTTAATCTTTCA
NONE
Os.54723.1.S1_at--140--7274Chr12:14917007..14917031 (25 bp)
GTCCTTTAAATTTATCATGTGGGCT
NONE
Os.54723.1.S1_at--935--4831Chr09:976881..976905 (25 bp)
GCTAATATAGTCTTTGGTCCCACCA
NONE
Os.54723.1.S1_at--284--2453Chr10:13506973..13506997 (25 bp)
AAAATCGCCACATAGACATGCCATG
NONE
Os.54723.1.S1_at--392--592Chr08:21776755..21776846 (25 bp)
ATGCCATGTCACCTTCATATGCAAA
NONE
Os.54723.1.S1_at--146--10252Chr09:976805..976829 (25 bp)
TTTGTCCAATTTACCTTTATGCATA
NONE
Os.54723.1.S1_at--217--7891Chr09:976679..976703 (25 bp)
GGTTATGTCTAATTTACCCTTATAT
NONE
Os.54723.1.S1_at--381--92Chr09:976547..976571 (25 bp)
ATTCTAGGCCTTATGACATAGGTTA
NONE
Os.54723.1.S1_at--870--56931Chr12:10103940..10103960 (21 bp)
GACTAAAGTAGCTATTCTCCCTATT
NONE
Os.54723.1.S1_at--836--7071Chr09:976412..976436 (25 bp)
GTAATTCACGGTTGTGGCTTCTTTA
NONE
Target Sequence 
AATTTCGCTCATGGGTCATTTTAGTCCTTAATCTTTCATATTATCCAAACAAGTCCTTTAAATTTATCATGTGGGCTAAT
ATAGTCTTTGGTCCCACCAAAATCGCCACATAGACATGCCATGTCACCTTCATATGCAAAATCTATATGATTTGTCCAAT
TTACCTTTATGCATAGGAAGATAAAAAACAAAAGGAAAAAGTTAAAAAATATATGGTATATGTAAGAGCAAACATATACT
TCAAAAGGGTAAAAAAACAAGTATTTTTTTTCCTATGGTTATGTCTAATTTACCCTTATATTTATTTTTCTATGATATAC
GTAAGGGTAAATTAGACAATTCATCATAGATTTTGCATGAATGATGACATGGCATATCCATATGATGATTTTGGTGGACC
CAAGGACTATTCTAGGCCTTATGACATAGGTTAAGGATTTCTTTGGACCATTTAAAAGGTTAAGGACTAAACTGATCCTA
CAGAGAAACTTTAGGGACTAAAGTAGCTATTCTCCCTATTATTTTTAATTAAGGTGTGATTTTGTAATTCACGGTTGTGG
CTTCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54723.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis