Browse Element(s) Details


OsAffx.24449.1.S1_at

Description tigr:9630.m02579
TID=OsAffx.24449.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2721011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27150OsAffx.12219.1.S1_at11/112+15975786..15976337hypothetical protein
LOC_Os02g27160NANA2+15981181..15984321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g27170OsAffx.24448.1.S1_at11/112+15987487..15988863hypothetical protein
LOC_Os02g27180NANA2+15989770..15990517hypothetical protein
LOC_Os02g27190NANA2+15994843..15995706hypothetical protein
LOC_Os02g27200Os.27363.1.S1_at11/112+15996166..15999155FAD binding domain containing protein, expressed
LOC_Os02g27210OsAffx.24449.1.S1_at11/112+16000553..16003428expressed protein
LOC_Os02g27210Os.54723.1.S1_at2/112+16000553..16003428expressed protein
LOC_Os02g27210Os.26894.1.A1_x_at1/112+16000553..16003428expressed protein
LOC_Os02g27210OsAffx.20993.1.S1_at1/112+16000553..16003428expressed protein
LOC_Os02g27220Os.46339.1.S1_at11/112+16003639..16008412protein phosphatase 2c, putative, expressed
LOC_Os02g27220Os.9705.1.S1_at11/112+16003639..16008412protein phosphatase 2c, putative, expressed
LOC_Os02g27230NANA2+16015719..16021663retrotransposon protein, putative, unclassified
LOC_Os02g27240Os.28943.1.S1_x_at2/112+16022284..16024758retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24449.1.S1_at--1127--5571Chr02:16000604..16000628 (25 bp)
GAAATGGTGCCAATGTCGAGGTCAA
LOC_Os02g27210
OsAffx.24449.1.S1_at--381--6031Chr02:16000646..16000670 (25 bp)
GAGATGTCGTGGACGCCTCCGAGTG
LOC_Os02g27210
OsAffx.24449.1.S1_at--533--1951Chr02:16000729..16000753 (25 bp)
ACTGGCGTCTTCTCATGAGCATCGA
LOC_Os02g27210
OsAffx.24449.1.S1_at--167--7151Chr02:16000735..16000759 (25 bp)
GTCTTCTCATGAGCATCGATTCTCC
LOC_Os02g27210
OsAffx.24449.1.S1_at--676--8631Chr02:16000768..16000792 (25 bp)
TGGGTGCCTCCCTGAGAGCTCTGGC
LOC_Os02g27210
OsAffx.24449.1.S1_at--711--9451Chr02:16000787..16000811 (25 bp)
TCTGGCTTCCCTGTCGCCATGGGTG
LOC_Os02g27210
OsAffx.24449.1.S1_at--607--6092Chr02:16001214..16001238 (25 bp)
GAGTACTTTGATAGTGCTATGGGAA
LOC_Os02g27210
OsAffx.24449.1.S1_at--281--10311Chr02:16001730..16002236 (25 bp)
TTATGACAAAGGTCTCCACGTGCCC
LOC_Os02g27210
OsAffx.24449.1.S1_at--522--9151Chr02:16002232..16002256 (25 bp)
TGCCCCGGGCGCAGAAATATGGCGA
LOC_Os02g27210
OsAffx.24449.1.S1_at--442--9931Chr02:16002249..16002273 (25 bp)
TATGGCGAAGTTGAAGTACGTTTGG
LOC_Os02g27210
OsAffx.24449.1.S1_at--819--1171Chr02:16002263..16002286 (24 bp)
AGTACGTTTGGAGGGCTTGACAGTA
LOC_Os02g27210
Target Sequence 
GAAATGGTGCCAATGTCGAGGTCAAGGAGGGGCTGTAACGAGGAGATGTCGTGGACGCCTCCGAGTGTGCCCGGATCTCC
CGCCGCCGAGGGTGCCTCCCTGAGAGCGCCGACTCTCCCTCCGCCACTGGCGTCTTCTCATGAGCATCGATTCTCCCGCC
TCCATGGGTGCCTCCCTGAGAGCTCTGGCTTCCCTGTCGCCATGGGTGCCTCCCTCAATCAACAAACACAGGAAAGACAA
AAAGAGTACTTTGATAGTGCTATGGGAAAAACAAAGAAAAGTTCAAAAAAAAGATTTTGCATGAATGATGACATGGCATA
TCCATATGATGATTTTGGTGGACCCAAGGACTATTCTAGGACTTATGACAAAGGTCTCCACGTGCCCCGGGCGCAGAAAT
ATGGCGAAGTTGAAGTACGTTTGGAGGGCTTGACAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis