Browse Element(s) Details


OsAffx.24448.1.S1_at

Description tigr:9630.m02575
TID=OsAffx.24448.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2717011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27130OsAffx.24446.1.S1_at10/112+15951144..15971311C2 domain-containing protein, putative, expressed
LOC_Os02g27130OsAffx.4419.1.S1_at1/112+15951144..15971311C2 domain-containing protein, putative, expressed
LOC_Os02g27140OsAffx.24447.1.S1_at11/112+15972844..15974179hypothetical protein
LOC_Os02g27150OsAffx.12219.1.S1_at11/112+15975786..15976337hypothetical protein
LOC_Os02g27160NANA2+15981181..15984321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g27170OsAffx.24448.1.S1_at11/112+15987487..15988863hypothetical protein
LOC_Os02g27180NANA2+15989770..15990517hypothetical protein
LOC_Os02g27190NANA2+15994843..15995706hypothetical protein
LOC_Os02g27200Os.27363.1.S1_at11/112+15996166..15999155FAD binding domain containing protein, expressed
LOC_Os02g27210OsAffx.24449.1.S1_at11/112+16000553..16003428expressed protein
LOC_Os02g27210Os.54723.1.S1_at2/112+16000553..16003428expressed protein
LOC_Os02g27210Os.26894.1.A1_x_at1/112+16000553..16003428expressed protein
LOC_Os02g27210OsAffx.20993.1.S1_at1/112+16000553..16003428expressed protein
LOC_Os02g27220Os.46339.1.S1_at11/112+16003639..16008412protein phosphatase 2c, putative, expressed
LOC_Os02g27220Os.9705.1.S1_at11/112+16003639..16008412protein phosphatase 2c, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24448.1.S1_at--976--9811Chr02:15987585..15987609 (25 bp)
TAAAATGCATGACACCCTACCAACA
LOC_Os02g27170
OsAffx.24448.1.S1_at--752--5791Chr02:15988465..15988489 (25 bp)
GACGAAGAGGTCCTACATTTTGTGA
LOC_Os02g27170
OsAffx.24448.1.S1_at--772--10831Chr02:15988503..15988527 (25 bp)
TTGGGCCACAATTGCTTTAATAGCT
LOC_Os02g27170
OsAffx.24448.1.S1_at--1144--291Chr02:15988522..15988546 (25 bp)
ATAGCTGATATTCCACTCGCAATTA
LOC_Os02g27170
OsAffx.24448.1.S1_at--288--9751Chr02:15988545..15988569 (25 bp)
TAATTTCCTACTCCCCAATGTGAAT
LOC_Os02g27170
OsAffx.24448.1.S1_at--67--251Chr02:15988581..15988686 (25 bp)
ATATGACACGGTGATCGATGCGTAT
LOC_Os02g27170
OsAffx.24448.1.S1_at--497--6351Chr02:15988678..15988702 (25 bp)
GATGCGTATGGTTACACCGCCAACA
LOC_Os02g27170
OsAffx.24448.1.S1_at--409--7891Chr02:15988687..15988711 (25 bp)
GGTTACACCGCCAACATAGCAAATC
LOC_Os02g27170
OsAffx.24448.1.S1_at--937--6091Chr02:15988721..15988745 (25 bp)
GAGTCATCACAACCTTCCAAAGTAA
LOC_Os02g27170
OsAffx.24448.1.S1_at--1020--3551Chr02:15988789..15988813 (25 bp)
CATCATTGGGTTTCACAAGTTGGCA
LOC_Os02g27170
OsAffx.24448.1.S1_at--581--10871Chr02:15988808..15988832 (25 bp)
TTGGCAAGATTTGTGTTGTGCGACA
LOC_Os02g27170
Target Sequence 
TAAAATGCATGACACCCTACCAACAAGGGTCTACAATCTAGAAGTAGACTATACAGATGATTATATTCTAACAAAAGAGG
ACGAAGAGGTCCTACATTTTGTGAGGAATAGCTACATTTGGGCCACAATTGCTTTAATAGCTGATATTCCACTCGCAATT
AATTTCCTACTCCCCAATGTGAATGGAGGATGGTTATATGACACGGTGATCGATGCGTATGGTTACACCGCCAACATAGC
AAATCATAATGCAGGAGTCATCACAACCTTCCAAAGTAACTTATTATTTGATGATTTTGAAGACTTCGATTCAAGATTTG
ATCATCATTGGGTTTCACAAGTTGGCAAGATTTGTGTTGTGCGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis