Browse Element(s) Details


OsAffx.10539.1.S1_x_at

Description gb:NM_184536.1
DB_XREF= gi:34896161
GEN=P0028E10.19
TID=OsAffx.10539.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (P0028E10.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0739011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07360Os.34142.1.S1_at11/111+3470648..3474136CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07364Os.50345.1.S1_at11/111+3475339..3475780expressed protein
LOC_Os01g07370Os.37822.3.A1_s_at11/111+3476198..3481381CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07370Os.37822.1.A1_a_at11/111+3476198..3481381CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07376Os.16494.1.S1_at11/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_x_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07382Os.38232.1.S1_at11/111+3490123..3493361expressed protein
LOC_Os01g07390Os.46325.1.A1_at11/111+3497896..3501595Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g07390OsAffx.10539.1.S1_x_at11/111+3497896..3501595Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g07400Os.10353.1.S1_at11/111+3502478..3507222SVP1-like protein 2, putative, expressed
LOC_Os01g07400Os.10353.2.S1_at11/111+3502478..3507222SVP1-like protein 2, putative, expressed
LOC_Os01g07410OsAffx.22754.1.S1_x_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07410OsAffx.22754.1.S1_s_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07410Os.17118.1.A1_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07420Os.1678.1.S1_at10/111+3513526..3515887hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g07430OsAffx.23147.1.S1_at11/111+3517580..3518778Myb-like DNA-binding domain containing protein
LOC_Os01g07430Os.57514.1.S1_x_at1/111+3517580..3518778Myb-like DNA-binding domain containing protein
LOC_Os01g07439NANA1+3525868..3526633NA

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10539.1.S1_x_at--994--7832Chr01:3498269..3498293 (25 bp)
GGTACGGCGTGCACTTCTCGGCGTC
LOC_Os01g07390
OsAffx.10539.1.S1_x_at--516--10591Chr01:3498283..3498307 (25 bp)
TTCTCGGCGTCGAGCTTCATCCAGG
LOC_Os01g07390
OsAffx.10539.1.S1_x_at--916--9091Chr01:3498323..3498347 (25 bp)
TGCTCGAGTACTCCGGGATCCTCCG
LOC_Os01g07390
OsAffx.10539.1.S1_x_at--409--1151Chr01:3498329..3498353 (25 bp)
AGTACTCCGGGATCCTCCGCGCGGA
LOC_Os01g07390
OsAffx.10539.1.S1_x_at--688--8611Chr01:3498402..3498426 (25 bp)
TGGTGAGGTGTCGATCCGGATTGTC
LOC_Os01g07390
OsAffx.10539.1.S1_x_at--71--5451Chr01:3498510..3498534 (25 bp)
GAACCCATCCACATCGGCTGCGGCG
LOC_Os01g07390
OsAffx.10539.1.S1_x_at--967--6971Chr01:3498582..3498606 (25 bp)
GTACCAGAGGTACGACATACAGCAG
LOC_Os01g07390
OsAffx.10539.1.S1_x_at--873--1311Chr01:3498587..3498611 (25 bp)
AGAGGTACGACATACAGCAGGTGGC
LOC_Os01g07390
OsAffx.10539.1.S1_x_at--981--7691Chr01:3498614..3498638 (25 bp)
GGTGGGTGGAGCAGATACTCCCCTT
LOC_Os01g07390
OsAffx.10539.1.S1_x_at--1127--7711Chr01:3498617..3498641 (25 bp)
GGGTGGAGCAGATACTCCCCTTCTC
LOC_Os01g07390
OsAffx.10539.1.S1_x_at--796--4011Chr01:3498654..3498678 (25 bp)
CGTCGTCTTCATCAGGCAGCACTTG
LOC_Os01g07390
Target Sequence 
GGTACGGCGTGCACTTCTCGGCGTCGAGCTTCATCCAGGCGCCGCTCTCCGCGCTGCTCGAGTACTCCGGGATCCTCCGC
GCGGACCCCGGCGGCGGGCCGCATCAGGTTGGGGGTGGGGGTGGGGGTGGGGGTGGTGAGGTGTCGATCCGGATTGTCGG
GTCCGGGGAGGCCGCCGGGGCGGCGTCCGAGAGGGGGGAGGAAGGGGTCGTGGAGGACGAGGCGGGGGCCGCCCCGCAGG
CGAACCCATCCACATCGGCTGCGGCGGCGGCGACGGCCGGCGGCGGGGAGGCGGGGAGGGAGTCCTCGTCGTCGTACCAG
AGGTACGACATACAGCAGGTGGCGAGGTGGGTGGAGCAGATACTCCCCTTCTCCCTTCTGCTGCTCGTCGTCTTCATCAG
GCAGCACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10539.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis