Browse Element(s) Details


Os.8855.1.S1_at

Description gb:AK102148.1
DB_XREF= gi:32987357
TID=Os.8855.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8855 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086C12, full insert sequence.
FL= gb:AK102148.1 gb:AK107859.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3184011/11expressed protein
LOC_Os01g066801/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31310OsAffx.5798.1.S1_at1/112+18776532..18779875retrotransposon protein, putative, LINE subclass
LOC_Os02g31320OsAffx.8589.1.S1_at1/112+18783935..18786919transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g31330Os.39476.1.S1_at3/112+18788106..18789189transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g31830OsAffx.2820.1.S1_at11/112+18791230..18797143hypothetical protein
LOC_Os02g31840Os.8855.1.S1_at11/112+18799627..18800720expressed protein
LOC_Os02g31850OsAffx.25860.3.S1_at11/112+18807205..18810136transposon protein, putative, unclassified
LOC_Os02g31860Os.14382.1.S1_at8/112+18812264..18815504expressed protein
LOC_Os02g31867Os.15317.1.A1_at11/112+18818690..18820281expressed protein
LOC_Os02g31874Os.11825.1.S1_at11/112+18821158..18825876expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8855.1.S1_at--1071--8791Chr02:18800091..18800115 (25 bp)
TGTTCTACGAGCAACTCAGGGCGCA
LOC_Os02g31840
Os.8855.1.S1_at--1112--5751Chr02:18800008..18800032 (25 bp)
GACGTGCACGTGTTGACCAGAGCGA
LOC_Os02g31840
Os.8855.1.S1_at--145--4651Chr02:18799947..18799971 (25 bp)
GCGTCGTGTATTGTGTGGTTCCAAC
LOC_Os02g31840
Os.8855.1.S1_at--471--7892Chr02:18799931..18799955 (25 bp)
GGTTCCAACCTTCGAGGAGTCTTCA
LOC_Os02g31840
Os.8855.1.S1_at--787--6091Chr02:18799915..18799939 (25 bp)
GAGTCTTCACTTTTGAGCGTTGCGC
LOC_Os02g31840
Os.8855.1.S1_at--653--1631Chr02:18799900..18799924 (25 bp)
AGCGTTGCGCTGTACCGGTGGTATC
LOC_Os02g31840
Os.8855.1.S1_at--1012--8472Chr06:25734876..25734895 (20 bp)
TGGCTAACCCGCGAATCCATTTATA
NONE
Os.8855.1.S1_at--186--1011Chr02:18799796..18799820 (25 bp)
AGGTTCCTGGATTAGCCACTTACAC
LOC_Os02g31840
Os.8855.1.S1_at--814--9891Chr02:18799755..18799779 (25 bp)
TACTTACTTTCGTCTTCTTCTCATT
LOC_Os02g31840
Os.8855.1.S1_at--989--9591Chr02:18799735..18799759 (25 bp)
TCATTCCTCTATGGCTCTCAGTAAT
LOC_Os02g31840
Os.8855.1.S1_at--650--1331Chr02:18799662..18799686 (25 bp)
AGAGTGTACGTCACCTGCGTCAGTA
LOC_Os02g31840
Target Sequence 
TGTTCTACGAGCAACTCAGGGCGCAGAGCTTCCACCCGCCCACTGTTCTCCAGTGCCGCTCGCCATGACCGGCCGGTGCC
ATGGACGTGCACGTGTTGACCAGAGCGAGCTAGCTCTATCCTCCTCTCTACTGCGTACGCGTGGGCGTCGTGTATTGTGT
GGTTCCAACCTTCGAGGAGTCTTCACTTTTGAGCGTTGCGCTGTACCGGTGGTATCTAAGGTTAAGGTAAAGGTGTAGGT
GGCTAACCCGCGAATCCATTTATANATTAAATGTTTATTTATTTAATTTATAAGTAGGTTCCTGGATTAGCCACTTACAC
CCTCATTAATCTACGGTACTTACTTTCGTCTTCTTCTCATTCCTCTATGGCTCTCAGTAATATCCCTCCTCCTCGGTGTT
GTAATTTGTAAGCTATTATTTACATGTGTAGAGTGTACGTCACCTGCGTCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis