Browse Element(s) Details


Os.15317.1.A1_at

Description gb:AK068281.1
DB_XREF= gi:32978299
TID=Os.15317.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.15317 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013146J12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146J12, full insert sequence.
FL= gb:AK068281.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3186711/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31830OsAffx.2820.1.S1_at11/112+18791230..18797143hypothetical protein
LOC_Os02g31840Os.8855.1.S1_at11/112+18799627..18800720expressed protein
LOC_Os02g31850OsAffx.25860.3.S1_at11/112+18807205..18810136transposon protein, putative, unclassified
LOC_Os02g31860Os.14382.1.S1_at8/112+18812264..18815504expressed protein
LOC_Os02g31867Os.15317.1.A1_at11/112+18818690..18820281expressed protein
LOC_Os02g31874Os.11825.1.S1_at11/112+18821158..18825876expressed protein
LOC_Os02g31881Os.52577.1.S1_at1/112+18828815..18830299NA
LOC_Os02g31890OsAffx.24525.1.S1_at11/112+18833325..18836550zinc finger family protein, putative
LOC_Os02g31899Os.35012.1.S1_at6/112+18837161..18837769NA
LOC_Os02g31910NANA2+18839683..18845973Potassium transporter 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15317.1.A1_at--443--6511Chr02:18819179..18819203 (25 bp)
GATATTCCGGTGAGTTGCTACCCGC
LOC_Os02g31867
Os.15317.1.A1_at--384--4491Chr02:18819088..18819112 (25 bp)
GCCGGTGGTTGCACGGTTGAATATA
LOC_Os02g31867
Os.15317.1.A1_at--827--10191Chr02:18819067..18819091 (25 bp)
TATATAGCACGTGCGTCATCGTCGT
LOC_Os02g31867
Os.15317.1.A1_at--397--3551Chr02:18819051..18819075 (25 bp)
CATCGTCGTTGCTGCGCGCGGGTTC
LOC_Os02g31867
Os.15317.1.A1_at--895--4531Chr02:18819036..18819060 (25 bp)
GCGCGGGTTCGATCGTTTCTTCATT
LOC_Os02g31867
Os.15317.1.A1_at--905--6391Chr02:18819026..18819050 (25 bp)
GATCGTTTCTTCATTTGTGCCGCGC
LOC_Os02g31867
Os.15317.1.A1_at--423--4871Chr02:18818949..18818973 (25 bp)
GCTTAAAGGTGTGTGTTCACGCTAA
LOC_Os02g31867
Os.15317.1.A1_at--115--791Chr02:18818771..18818795 (25 bp)
ATGTGGGCGGCCTGTAGTTCTTCTT
LOC_Os02g31867
Os.15317.1.A1_at--485--9551Chr02:18818750..18818774 (25 bp)
TCTTTGCTGCTTCAATATACCCTTC
LOC_Os02g31867
Os.15317.1.A1_at--135--10191Chr02:18818735..18818759 (25 bp)
TATACCCTTCCTACTGTATTTTGTA
LOC_Os02g31867
Os.15317.1.A1_at--170--251Chr02:18818697..18818721 (25 bp)
ATATACTGTGCTACTCGTTGGAGTT
LOC_Os02g31867
Target Sequence 
GATATTCCGGTGAGTTGCTACCCGCCGCCGCCGACGGCGGCGACGATGTACGGCGGGGGATGCGGGTACGCGGCGGCGCC
GGAGTGGGACGGCCGGTGGTTGCACGGTTGAATATATAGCACGTGCGTCATCGTCGTTGCTGCGCGCGGGTTCGATCGTT
TCTTCATTTGTGCCGCGCGCCCTCTGCCTCGTTTTTTTAAATTATTTTTGTGTTTTAAATTTGTTTGTTTGCTTAAAGGT
GTGTGTTCACGCTAAAATTAGAAGTTTGATTGAAATTGAAACAATGTGACGGAAAAGTTGGAAGTTTGTGTGTGTAGGAA
AGTTTAATGTGATGAAAAAGTTAAAAGTTTGAAGAAAAAATTGGGAACTAAACCAGACCTAAGTTTAAGTTTTGGGCATA
GGCGGAGAATGTGGGCGGCCTGTAGTTCTTCTTTGCTGCTTCAATATACCCTTCCTACTGTATTTTGTAATTTTTTGANA
NNAATATACTGTGCTACTCGTTGGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15317.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis