Browse Element(s) Details


OsAffx.24525.1.S1_at

Description tigr:9630.m03014
TID=OsAffx.24525.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to zinc finger protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3189011/11zinc finger family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31850OsAffx.25860.3.S1_at11/112+18807205..18810136transposon protein, putative, unclassified
LOC_Os02g31860Os.14382.1.S1_at8/112+18812264..18815504expressed protein
LOC_Os02g31867Os.15317.1.A1_at11/112+18818690..18820281expressed protein
LOC_Os02g31874Os.11825.1.S1_at11/112+18821158..18825876expressed protein
LOC_Os02g31881Os.52577.1.S1_at1/112+18828815..18830299NA
LOC_Os02g31890OsAffx.24525.1.S1_at11/112+18833325..18836550zinc finger family protein, putative
LOC_Os02g31899Os.35012.1.S1_at6/112+18837161..18837769NA
LOC_Os02g31910NANA2+18839683..18845973Potassium transporter 1, putative, expressed
LOC_Os02g31920Os.49414.1.S1_at11/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.47711.1.A1_s_at6/112+18853871..18856948hypothetical protein
LOC_Os02g31920OsAffx.2821.1.S1_at5/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.41918.1.S1_at2/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.41918.1.S1_x_at2/112+18853871..18856948hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24525.1.S1_at--1125--751Chr02:18833900..18833924 (25 bp)
ATGTCTGCAACAGCCTTGCTACAGA
LOC_Os02g31890
OsAffx.24525.1.S1_at--499--571Chr02:18833842..18833866 (25 bp)
ATCCTATTTCGCCATTACTTCTTAA
LOC_Os02g31890
OsAffx.24525.1.S1_at--175--5471Chr02:18833697..18833721 (25 bp)
GAACTCTTACATGATTGGCCGTGGT
LOC_Os02g31890
OsAffx.24525.1.S1_at--49--8471Chr02:18833682..18833706 (25 bp)
TGGCCGTGGTAATATTCTGATCAAC
LOC_Os02g31890
OsAffx.24525.1.S1_at--518--5091Chr02:18833657..18833681 (25 bp)
GCACCGTGGTCCAGTGGCATCATGA
LOC_Os02g31890
OsAffx.24525.1.S1_at--261--7831Chr02:18833627..18833651 (25 bp)
GGTACTGTGCCTTTAATTGGACTAA
LOC_Os02g31890
OsAffx.24525.1.S1_at--271--6471Chr02:18833570..18833594 (25 bp)
GATAACCCTAGCATTTTCCCTGAAA
LOC_Os02g31890
OsAffx.24525.1.S1_at--128--6331Chr02:18833495..18833519 (25 bp)
GATGCAGGACTAACCCAAGACTTTC
LOC_Os02g31890
OsAffx.24525.1.S1_at--254--10011Chr02:18833442..18833466 (25 bp)
TATGAGTTCCGAGACCTACAACGCG
LOC_Os02g31890
OsAffx.24525.1.S1_at--777--4291Chr02:18833428..18833452 (25 bp)
CCTACAACGCGGATGTGACAGCATT
LOC_Os02g31890
OsAffx.24525.1.S1_at--474--8171Chr02:18833373..18833397 (25 bp)
GGAACATATCTACTCTTACCATCAG
LOC_Os02g31890
Target Sequence 
ATGTCTGCAACAGCCTTGCTACAGAAAGCTGCAGAGATGGGAGCAAAGACCAGCCAGGATCCTATTTCGCCATTACTTCT
TAAAAGTTTCCCAAATAACTTGACTAGTTCTAGAGATCATATGAACATATCTTCTAGAAGCCAGGGAGATTCCCTTGGGA
ATTCAACAGTTAATAGTGATTGCATGAAGACAACTGAAGATGAGAACTCTTACATGATTGGCCGTGGTAATATTCTGATC
AACGCACCGTGGTCCAGTGGCATCATGAGGCCAGGTACTGTGCCTTTAATTGGACTAATGAACCATCCATTTTCCATGAG
AGAAGAAAAGGATAACCCTAGCATTTTCCCTGAAAACCAGACACAGCACAACAGACAGGACAACATTTCAGGTGTAGTAG
ATGCAGATGCAGGACTAACCCAAGACTTTCTGGGTTTAGGAGGGAGTGGGACTTTGGATATGAGTTCCGAGACCTACAAC
GCGGATGTGACAGCATTAAGCTATTCTGATGAGCAGGAGAAACCTCAGGAACATATCTACTCTTACCATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24525.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis