Browse Element(s) Details


Os.52577.1.S1_at

Description gb:AK068128.1
DB_XREF= gi:32978146
TID=Os.52577.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52577 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013130C23, full insert sequence.
FL= gb:AK105689.1 gb:AK068128.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2411011/11Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os02g318811/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24070OsAffx.828.1.S1_x_at1/114+13723047..13725507retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g24080NANA4+13725824..13728763retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g24090NANA4+13735888..13736361retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g24100NANA4+13737838..13741817retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g24110Os.52577.1.S1_at11/114+13746626..13748556Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os04g24110Os.52577.1.S1_x_at11/114+13746626..13748556Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os04g24110OsAffx.29957.1.S1_x_at1/114+13746626..13748556Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os04g24120OsAffx.17138.1.S1_at1/114+13754113..13755340hypothetical protein
LOC_Os04g24130OsAffx.13947.1.S1_at11/114+13769424..13772731hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52577.1.S1_at--1011--891Chr04:13748263..13748287 (25 bp)
AGGCGAGGAACGTCGCCGCGCTGGC
LOC_Os04g24110
Os.52577.1.S1_at--1003--6171Chr04:13748340..13748364 (25 bp)
GAGGAGATGGTTGCCACGCTCTGCC
LOC_Os04g24110
Os.52577.1.S1_at--391--6031Chr04:13748343..13748367 (25 bp)
GAGATGGTTGCCACGCTCTGCCGCC
LOC_Os04g24110
Os.52577.1.S1_at--906--3771Chr04:13748358..13748382 (25 bp)
CTCTGCCGCCCTGTTGAAGGAGATA
LOC_Os04g24110
Os.52577.1.S1_at--493--9171Chr04:13748361..13748385 (25 bp)
TGCCGCCCTGTTGAAGGAGATACAC
LOC_Os04g24110
Os.52577.1.S1_at--1152--5291Chr04:13748373..13748397 (25 bp)
GAAGGAGATACACCGAAACCCACAA
LOC_Os04g24110
Os.52577.1.S1_at--470--10191Chr04:13748406..13748430 (25 bp)
TATTTGTTTCTACGTTTGACCGTCA
LOC_Os04g24110
Os.52577.1.S1_at--1076--8772Chr04:13748410..13748434 (25 bp)
TGTTTCTACGTTTGACCGTCATCTT
LOC_Os04g24110
Os.52577.1.S1_at--207--6851Chr04:13748419..13748443 (25 bp)
GTTTGACCGTCATCTTATAATCTAT
LOC_Os04g24110
Os.52577.1.S1_at--162--5831Chr04:13748423..13748447 (25 bp)
GACCGTCATCTTATAATCTATCTAT
LOC_Os04g24110
Os.52577.1.S1_at--587--7132Chr04:13748427..13748451 (25 bp)
GTCATCTTATAATCTATCTATCTAT
LOC_Os04g24110
Target Sequence 
AGGCGAGGAACGTCGCCGCGCTGGCGTCCAAGGCGCGAGAAGCGGTCGCCGAGGGCGGGTCGTCGTGGAAGGCGCTGGAG
GAGATGGTTGCCACGCTCTGCCGCCCTGTTGAAGGAGATACACCGAAACCCACAAAATAAGTTTATTTGTTTCTACGTTT
GACCGTCATCTTATAATCTATCTATCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis