Browse Element(s) Details


OsAffx.13947.1.S1_at

Description tigr:9632.m02247
TID=OsAffx.13947.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2413011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24110Os.52577.1.S1_at11/114+13746626..13748556Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os04g24110Os.52577.1.S1_x_at11/114+13746626..13748556Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os04g24110OsAffx.29957.1.S1_x_at1/114+13746626..13748556Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os04g24120OsAffx.17138.1.S1_at1/114+13754113..13755340hypothetical protein
LOC_Os04g24130OsAffx.13947.1.S1_at11/114+13769424..13772731hypothetical protein
LOC_Os04g24140Os.8241.1.S1_at10/114+13777562..13778826ribose 5-phosphate isomerase, putative, expressed
LOC_Os04g24160OsAffx.13948.1.S1_at11/114+13791068..13792295hypothetical protein
LOC_Os04g24170Os.8059.1.S1_at11/114+13796968..13805493RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13947.1.S1_at--1142--3912Chr08:17856306..17856330 (25 bp)
CGGCCTCAAGAGGAGCATCCTGGTG
NONE
OsAffx.13947.1.S1_at--530--6131Chr04:13770149..13770170 (22 bp)
GAGGGCATGGGCACAGATCGCGCAG
LOC_Os04g24130
OsAffx.13947.1.S1_at--37--1191Chr04:13769752..13770102 (25 bp)
AGTACGAGGAGCTTCACCAGTGCGC
LOC_Os04g24130
OsAffx.13947.1.S1_at--896--5911Chr04:13769744..13769767 (24 bp)
GAGCTTCACCAGTGCGCCAAGTGGG
LOC_Os04g24130
OsAffx.13947.1.S1_at--645--9691Chr04:13769693..13769717 (25 bp)
TCAAATTTCTTCGATGTCGGCGTGT
LOC_Os04g24130
OsAffx.13947.1.S1_at--709--191Chr04:13769689..13769713 (25 bp)
ATTTCTTCGATGTCGGCGTGTCCAA
LOC_Os04g24130
OsAffx.13947.1.S1_at--578--6631Chr04:13769618..13769642 (25 bp)
GTTGTGTCTGGCATGTATGAGCTCC
LOC_Os04g24130
OsAffx.13947.1.S1_at--1119--4971Chr04:13769608..13769632 (25 bp)
GCATGTATGAGCTCCAACGCCACCG
LOC_Os04g24130
OsAffx.13947.1.S1_at--334--7891Chr04:13769568..13769592 (25 bp)
GGTTCACCATCGACACACTGAAGGG
LOC_Os04g24130
OsAffx.13947.1.S1_at--371--7571Chr04:13769545..13769569 (25 bp)
GGGCGCTGCTCATTGTCTATGCTGA
LOC_Os04g24130
OsAffx.13947.1.S1_at--185--51Chr04:13769534..13769558 (25 bp)
ATTGTCTATGCTGACCGGATGCCGC
LOC_Os04g24130
Target Sequence 
CGGCCTCAAGAGGAGCATCCTGGTGGAGGCGTACGCCGCGGCGCACGCTGAGCAGCCGCCGACAGCCCGCCTCGCTCGCC
TGCTCCGGCGCCCACCTGCCCGTCCGCTCCCGGGAAGAAGAGAGAGAGGAGAGGGAAACAAAGAGGAGTGAGGATGAGGA
AGAAGAGCGAAGGGAGAGGGCATGGGCACAGATCGCGCAGCGGCAAGCGTTCGGCGCGCACGACGACGGGCGGTCAGCGC
AGGCGCAGTACGAGGAGCTTCACCAGTGCGCCAAGTGGGATGCTGAGGGCCGGCGGCTGCTTGTGTCAAATTTCTTCGAT
GTCGGCGTGTCCAAGCTCTACGCCGCCGGGACAGCGGGGAAGGAGAAGGAGGAGGAGCGGGTTGTGTCTGGCATGTATGA
GCTCCAACGCCACCGGGAGGGTCGCGCTGGGGTTCACCATCGACACACTGAAGGGGCGCTGCTCATTGTCTATGCTGACC
GGATGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis