Browse Element(s) Details


OsAffx.13948.1.S1_at

Description tigr:9632.m02250
TID=OsAffx.13948.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2416011/11hypothetical protein
LOC_Os11g296703/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24130OsAffx.13947.1.S1_at11/114+13769424..13772731hypothetical protein
LOC_Os04g24140Os.8241.1.S1_at10/114+13777562..13778826ribose 5-phosphate isomerase, putative, expressed
LOC_Os04g24160OsAffx.13948.1.S1_at11/114+13791068..13792295hypothetical protein
LOC_Os04g24170Os.8059.1.S1_at11/114+13796968..13805493RNA recognition motif family protein, expressed
LOC_Os04g24180Os.11329.1.S1_at11/114+13810029..13816528DNAJ heat shock N-terminal domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13948.1.S1_at--922--7253Chr12:577167..577191 (25 bp)
GTCCTCATCGAAGGTGATCACCGCG
NONE
OsAffx.13948.1.S1_at--987--514Chr12:577173..577197 (25 bp)
ATCGAAGGTGATCACCGCGGCATCG
NONE
OsAffx.13948.1.S1_at--515--394Chr12:577183..577207 (25 bp)
ATCACCGCGGCATCGGGCACGATTA
NONE
OsAffx.13948.1.S1_at--1095--493Chr11:16698826..16698850 (25 bp)
ATCGGGCACGATTAGGAGGATGCTC
NONE
OsAffx.13948.1.S1_at--835--9713Chr12:577259..577283 (25 bp)
TCAACCTCCCCGAAGTCGTCAAGGG
NONE
OsAffx.13948.1.S1_at--92--7132Chr11:16698714..16698738 (25 bp)
GTCATGGAGTACTGCGACCACCACC
NONE
OsAffx.13948.1.S1_at--365--3693Chr11:16698099..16698123 (25 bp)
CTTTGGAGGAGGAGCGCTTGCGGTC
LOC_Os11g29670
OsAffx.13948.1.S1_at--853--6115Chr06:28577628..28577652 (25 bp)
GAGGGCGGTGTCCTCGAAGTCGAGC
NONE
OsAffx.13948.1.S1_at--415--8672Chr11:16697977..16698001 (25 bp)
TGTGTGCGCCTGGTGCTTCGACTCA
LOC_Os11g29670
OsAffx.13948.1.S1_at--730--8612Chr11:16697967..16697991 (25 bp)
TGGTGCTTCGACTCACGGACTTCGC
LOC_Os11g29670
OsAffx.13948.1.S1_at--632--3931Chr04:13791098..13791122 (25 bp)
CGGCGTTGGTCTTCACGGCGGTGGC
LOC_Os04g24160
Target Sequence 
GTCCTCATCGAAGGTGATCACCGCGGCATCGGGCACGATTAGGAGGATGCTCGAGGAGGGCCGCGGCAGCGGCGGCGGCG
GCGAGGACGACGTCGTCGTCAACCTCCCCGAAGTCGTCAAGGGCGCCGCCCTCGCCCGCGTCATGGAGTACTGCGACCAC
CACCACGGCGGCGGCGCCGACCCGGGCTCCGCCCGACGCCCAACTCGCGGCCGTCTCGTTCTCGGCTTCGGCGGCGGCGA
CGAGGGGGAGGAGTTGTCGGCGGTGTCGGCTTTGGAGGAGGAGCGCTTGCGGTCGGGGTCGGGGACGGCGGCGGCGAGGG
AGCCCGGGAGGCGGAGGGTGAGGGCGGTGTCCTCGAAGTCGAGCCCCAACACCGCGGACGACTGGAGCGGCTGTGTGCGC
CTGGTGCTTCGACTCACGGACTTCGCCGGCGTTGGTCTTCACGGCGGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis