Browse Element(s) Details


Os.8241.1.S1_at

Description gb:AK103443.1
DB_XREF= gi:32988652
TID=Os.8241.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8241 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033129E13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033129E13, full insert sequence.
FL= gb:AK103443.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2414010/11ribose 5-phosphate isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24120OsAffx.17138.1.S1_at1/114+13754113..13755340hypothetical protein
LOC_Os04g24130OsAffx.13947.1.S1_at11/114+13769424..13772731hypothetical protein
LOC_Os04g24140Os.8241.1.S1_at10/114+13777562..13778826ribose 5-phosphate isomerase, putative, expressed
LOC_Os04g24160OsAffx.13948.1.S1_at11/114+13791068..13792295hypothetical protein
LOC_Os04g24170Os.8059.1.S1_at11/114+13796968..13805493RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8241.1.S1_at--579--5751Chr04:13778231..13778255 (25 bp)
GACGGATTGCCTGGCTTCAGCGCGA
LOC_Os04g24140
Os.8241.1.S1_at--982--9151Chr04:13778238..13778262 (25 bp)
TGCCTGGCTTCAGCGCGAGGCTCAG
LOC_Os04g24140
Os.8241.1.S1_at--1078--5611Chr04:13778312..13778336 (25 bp)
GACAACGGCAACTACATCGTCGAGA
LOC_Os04g24140
Os.8241.1.S1_at--672--6731Chr04:13778338..13778362 (25 bp)
GTTCTTCGAGGATGGCATACGCGGC
LOC_Os04g24140
Os.8241.1.S1_at--448--731Chr04:13778420..13778444 (25 bp)
ATGTTCCTCGGCATGGCCACCTCGG
LOC_Os04g24140
Os.8241.1.S1_at--874--6371Chr04:13778735..13778755 (21 bp)
GATCCCATGGTAATATCAAGTCAAT
LOC_Os04g24140
Os.8241.1.S1_at--218--3131Chr04:13778753..13778777 (25 bp)
AATTTCTTCGTCATTATCTGCTTTC
LOC_Os04g24140
Os.8241.1.S1_at--1067--7111Chr04:13778762..13778786 (25 bp)
GTCATTATCTGCTTTCTTGAATTTG
LOC_Os04g24140
Os.8241.1.S1_at--898--5212Chr04:13778780..13778804 (25 bp)
GAATTTGCATTGGTTGGTCAGTAAG
LOC_Os04g24140
Os.8241.1.S1_at--922--9051Chr04:13778785..13778809 (25 bp)
TGCATTGGTTGGTCAGTAAGTTACT
LOC_Os04g24140
Os.8241.1.S1_at--543--871Chr04:13778803..13778827 (25 bp)
AGTTACTGAAGGTGGATTGGACCTA
NONE
Target Sequence 
GACGGATTGCCTGGCTTCAGCGCGAGGCTCAGGACGNTCGCCTCCAAGGACGGCGAGGGGAAGGAGGAGATGTTCGTCAC
CGACAACGGCAACTACATCGTCGAGATGTTCTTCGAGGATGGCATACGCGGCGACCTCAACGAGATCAGCGACCGCCTCC
TACGGATCACCGGCGTCGTCGAGCACGGCATGTTCCTCGGCATGGCCACCTCGGTGGTCGTCGCCAAGAAGGACGGCACC
GTCGCCCTGCTCCACAAGAAGAAGTANCCGCCCCGGCAGCGGCGGCGGNGCCACCACCGACGCCAAAATAAACCAAGATT
TTGCAGCGAAGCGAGGGCAGCCCCAGCAGCTGGTGCCCCTCCCCAACCCAAGTATCTATTGCTCTCTAGTATGTTGAACT
TGATGTACGTCTCTACTATTACCATGATTTCTCTCTTTTTTTCATGGTAATGTTCTTGAGTGATGCTATCAATGGACGAA
GNTAATAACTTGTGGACTTTTGATCCCATGGTAATATCAAGTCAATTTCTTCGTCATTATCTGCTTTCTTGAATTTGCAT
TGGTTGGTCAGTAAGTTACTGAAGGTGGATTGGACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis