Browse Element(s) Details


Os.35012.1.S1_at

Description gb:AK069284.1
DB_XREF= gi:32979308
TID=Os.35012.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.35012 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023010F15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010F15, full insert sequence.
FL= gb:AK069284.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g318996/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31860Os.14382.1.S1_at8/112+18812264..18815504expressed protein
LOC_Os02g31867Os.15317.1.A1_at11/112+18818690..18820281expressed protein
LOC_Os02g31874Os.11825.1.S1_at11/112+18821158..18825876expressed protein
LOC_Os02g31881Os.52577.1.S1_at1/112+18828815..18830299NA
LOC_Os02g31890OsAffx.24525.1.S1_at11/112+18833325..18836550zinc finger family protein, putative
LOC_Os02g31899Os.35012.1.S1_at6/112+18837161..18837769NA
LOC_Os02g31910NANA2+18839683..18845973Potassium transporter 1, putative, expressed
LOC_Os02g31920Os.49414.1.S1_at11/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.47711.1.A1_s_at6/112+18853871..18856948hypothetical protein
LOC_Os02g31920OsAffx.2821.1.S1_at5/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.41918.1.S1_at2/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.41918.1.S1_x_at2/112+18853871..18856948hypothetical protein
LOC_Os02g31930OsAffx.2822.1.S1_at11/112+18862451..18862808hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35012.1.S1_at--16--7331Chr02:18836967..18836991 (25 bp)
GTGCTACTGGACCTTTATTTTTCTC
NONE
Os.35012.1.S1_at--518--10211Chr02:18836982..18837006 (25 bp)
TATTTTTCTCCTGCTGTGAGTATAA
NONE
Os.35012.1.S1_at--74--5511Chr02:18837011..18837035 (25 bp)
GAACACCTTGTAACTATCGACACGA
NONE
Os.35012.1.S1_at--382--3151Chr02:18837042..18837066 (25 bp)
AATTCATGTCATATTTCACCGCAGG
NONE
Os.35012.1.S1_at--60--9691Chr02:18837057..18837168 (25 bp)
TCACCGCAGGTGGAACAATGGCTGT
NONE
Os.35012.1.S1_at--107--5991Chr02:18837242..18837266 (25 bp)
GAGACAAACTCTGGCCATGTTCTTT
LOC_Os02g31899
Os.35012.1.S1_at--479--8431Chr02:18837254..18837278 (25 bp)
GGCCATGTTCTTTTTCTAACCGGCA
LOC_Os02g31899
Os.35012.1.S1_at--301--10291Chr02:18837266..18837290 (25 bp)
TTTCTAACCGGCATCCATGGTATCT
LOC_Os02g31899
Os.35012.1.S1_at--791--1011Chr02:18837367..18837391 (25 bp)
AGGTTTCCACGGCATGTCATCCAAT
LOC_Os02g31899
Os.35012.1.S1_at--646--3971Chr02:18837470..18837494 (25 bp)
CGGTCTCAGCATCTGCATTGGATTT
LOC_Os02g31899
Os.35012.1.S1_at--694--10371Chr02:18837509..18837533 (25 bp)
TTTTTTGGATTTGCTCACTGACCTC
LOC_Os02g31899
Target Sequence 
GTGCTACTGGACCTTTATTTTTCTCCTGCTGTGAGTATAAATCTGAACACCTTGTAACTATCGACACGAGGATGGAATTC
ATGTCATATTTCACCGCAGGTGGAACAATGGCTGTGAAGAGCAGGCAGGAGGCGGTTTTGTCGGTACAAGGAAGGTGATG
GATATGACAAGGGGGAGATCCGGGAGGAGAGACAAACTCTGGCCATGTTCTTTTTCTAACCGGCATCCATGGTATCTCCC
TCCTCTGCTGGCACAANTGTCAGACTTGNTNTTGTTTTAGTGCTTGGAGCATGNTGGNACCTGGGGGCTTTNAAGGTTTC
CACGGCATGTCATCCAATGCAGATACTGAGACCGGAGAGAGGNTGNAAGGTATGTCAAATGAACCGTTCNCCGATTTGGN
TACTTCNAGTTATCTCCGGTCTCAGCATCTGCATTGGATTTGTCCANAGATGGGTTTTTTTGGATTTGCTCACTGACCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis