Browse Element(s) Details


OsAffx.2821.1.S1_at

Description tigr:9630.m03017
TID=OsAffx.2821.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g319205/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31881Os.52577.1.S1_at1/112+18828815..18830299NA
LOC_Os02g31890OsAffx.24525.1.S1_at11/112+18833325..18836550zinc finger family protein, putative
LOC_Os02g31899Os.35012.1.S1_at6/112+18837161..18837769NA
LOC_Os02g31910NANA2+18839683..18845973Potassium transporter 1, putative, expressed
LOC_Os02g31920Os.49414.1.S1_at11/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.47711.1.A1_s_at6/112+18853871..18856948hypothetical protein
LOC_Os02g31920OsAffx.2821.1.S1_at5/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.41918.1.S1_at2/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.41918.1.S1_x_at2/112+18853871..18856948hypothetical protein
LOC_Os02g31930OsAffx.2822.1.S1_at11/112+18862451..18862808hypothetical protein
LOC_Os02g31940Os.49906.1.S1_at10/112+18866419..18872631Potassium transporter 1, putative, expressed
LOC_Os02g31940Os.11262.2.S1_x_at1/112+18866419..18872631Potassium transporter 1, putative, expressed
LOC_Os02g31950OsAffx.12310.1.S1_at11/112+18876585..18876860hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2821.1.S1_at--425--8771Chr02:18856394..18856745 (25 bp)
TGTATTGCCATTCAGCTGCTTTGGC
LOC_Os02g31920
OsAffx.2821.1.S1_at--750--6871NONE
GTATTGCCATTCAGCTGCTTTGGCA
NONE
OsAffx.2821.1.S1_at--256--10231Chr02:18856396..18856747 (25 bp)
TATTGCCATTCAGCTGCTTTGGCAA
LOC_Os02g31920
OsAffx.2821.1.S1_at--1057--71Chr02:18856397..18856748 (25 bp)
ATTGCCATTCAGCTGCTTTGGCAAT
LOC_Os02g31920
OsAffx.2821.1.S1_at--717--4791Chr02:18856853..18856877 (25 bp)
GCTCCCTATGCAACCTGGCATTTCG
LOC_Os02g31920
OsAffx.2821.1.S1_at--714--3791Chr02:18856854..18856878 (25 bp)
CTCCCTATGCAACCTGGCATTTCGA
LOC_Os02g31920
OsAffx.2821.1.S1_at--281--2152Chr08:14154350..14154374 (25 bp)
ACAGCTTCTTGTGGATGCTTAGTTT
NONE
OsAffx.2821.1.S1_at--990--3392Chr08:14154351..14154375 (25 bp)
CAGCTTCTTGTGGATGCTTAGTTTG
NONE
OsAffx.2821.1.S1_at--942--1552Chr08:14154352..14154376 (25 bp)
AGCTTCTTGTGGATGCTTAGTTTGT
NONE
OsAffx.2821.1.S1_at--296--4912Chr08:14154353..14154377 (25 bp)
GCTTCTTGTGGATGCTTAGTTTGTA
NONE
Target Sequence 
TGTATTGCCATTCAGCTGCTTTGGCAATCCCAGTTGCTGTCCAGAGTAAAGATTTTCATGTGGCTTGCGCTAAAGGGCAG
ATGCCTCATGGCTGACAATCTACAGAAAATAGGTGGCCTCATCAGGCGAATTGCTCCCTATGCAACCTGGCATTTCGAGA
TGACACCCAACCTTTTGTTCAATGTGCTTTTACAAACAGGATTTGGAGATTGCTCAGGAGCTAAGTGAATGTTGGCTTTC
CGCTTCCAAGTGACCTCAATGTTGACTTGGCTGATTGGCGGATGGCTTCAAGGAGAAGCTTCAGAGATTGTCTCAGAAAA
GTTTTCGATACTCTCTTCTTCTTCAGAGATTGTCTCAGGAAGTTGTATGGCTGTGCAGCTCTTTGGTGACATCAAAGAAA
AAATCACAATCTGGAGGGAGGCAGGCTTCATGGTAGGCGAAAAACGATTGGTATTATTCCTTTTGCAGTTTTTTCTCTCC
CGCTCTTTGTAACCGGTTTCGACAGCTTCTTGTGGATGCTTAGTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis