Browse Element(s) Details


OsAffx.12310.1.S1_at

Description tigr:9630.m03020
TID=OsAffx.12310.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3195011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31920Os.49414.1.S1_at11/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.47711.1.A1_s_at6/112+18853871..18856948hypothetical protein
LOC_Os02g31920OsAffx.2821.1.S1_at5/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.41918.1.S1_at2/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.41918.1.S1_x_at2/112+18853871..18856948hypothetical protein
LOC_Os02g31930OsAffx.2822.1.S1_at11/112+18862451..18862808hypothetical protein
LOC_Os02g31940Os.49906.1.S1_at10/112+18866419..18872631Potassium transporter 1, putative, expressed
LOC_Os02g31940Os.11262.2.S1_x_at1/112+18866419..18872631Potassium transporter 1, putative, expressed
LOC_Os02g31950OsAffx.12310.1.S1_at11/112+18876585..18876860hypothetical protein
LOC_Os02g31960Os.37797.1.A1_s_at11/112+18884061..18891149ATP/GTP binding protein, putative, expressed
LOC_Os02g31960Os.37797.1.A1_at11/112+18884061..18891149ATP/GTP binding protein, putative, expressed
LOC_Os02g31970NANA2+18891680..18896222retrotransposon protein, putative, unclassified
LOC_Os02g31980OsAffx.12311.1.S1_x_at11/112+18896745..18897044proton-dependent oligopeptide transport, putative
LOC_Os02g31980OsAffx.12311.1.S1_at11/112+18896745..18897044proton-dependent oligopeptide transport, putative
LOC_Os02g31990NANA2+18897951..18898370hypothetical protein
LOC_Os02g32000OsAffx.2823.1.S1_at11/112+18899590..18899823hypothetical protein
LOC_Os02g32000OsAffx.2823.1.S1_x_at11/112+18899590..18899823hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12310.1.S1_at--488--4091Chr02:18876628..18876652 (25 bp)
CGACCCAAGTGGTGATAGCGTCCTT
LOC_Os02g31950
OsAffx.12310.1.S1_at--950--6451Chr02:18876641..18876665 (25 bp)
GATAGCGTCCTTGAAAAGTGTCGGG
LOC_Os02g31950
OsAffx.12310.1.S1_at--381--4691Chr02:18876667..18876691 (25 bp)
GCGGAGTGCCACCTCTCCTCATTGG
LOC_Os02g31950
OsAffx.12310.1.S1_at--1114--691Chr02:18876718..18876742 (25 bp)
ATGATGGCACCGTCAAGCTCGGCAG
LOC_Os02g31950
OsAffx.12310.1.S1_at--387--7091Chr02:18876729..18876753 (25 bp)
GTCAAGCTCGGCAGATCCGGCCTAG
LOC_Os02g31950
OsAffx.12310.1.S1_at--737--1291Chr02:18876741..18876765 (25 bp)
AGATCCGGCCTAGGGCTCATCAAAT
LOC_Os02g31950
OsAffx.12310.1.S1_at--665--4251Chr02:18876745..18876769 (25 bp)
CCGGCCTAGGGCTCATCAAATTTGG
LOC_Os02g31950
OsAffx.12310.1.S1_at--1012--10071Chr02:18876751..18876775 (25 bp)
TAGGGCTCATCAAATTTGGCCTCGA
LOC_Os02g31950
OsAffx.12310.1.S1_at--66--2251Chr02:18876762..18876786 (25 bp)
AAATTTGGCCTCGAGCGGTGGCGAA
LOC_Os02g31950
OsAffx.12310.1.S1_at--842--8471Chr02:18876780..18876804 (25 bp)
TGGCGAATGATCATCAGGGCGCTGC
LOC_Os02g31950
OsAffx.12310.1.S1_at--848--5271Chr02:18876784..18876808 (25 bp)
GAATGATCATCAGGGCGCTGCACGA
LOC_Os02g31950
Target Sequence 
CGACCCAAGTGGTGATAGCGTCCTTGAAAAGTGTCGGGGGCGGAGTGCCACCTCTCCTCATTGGCCCAGAAACCACAAGA
GAAGATGCAAATGATGGCACCGTCAAGCTCGGCAGATCCGGCCTAGGGCTCATCAAATTTGGCCTCGAGCGGTGGCGAAT
GATCATCAGGGCGCTGCACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12310.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis