Browse Element(s) Details


OsAffx.12311.1.S1_at

Description tigr:9630.m03023
TID=OsAffx.12311.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=peptide transporter, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3198011/11proton-dependent oligopeptide transport, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31940Os.49906.1.S1_at10/112+18866419..18872631Potassium transporter 1, putative, expressed
LOC_Os02g31940Os.11262.2.S1_x_at1/112+18866419..18872631Potassium transporter 1, putative, expressed
LOC_Os02g31950OsAffx.12310.1.S1_at11/112+18876585..18876860hypothetical protein
LOC_Os02g31960Os.37797.1.A1_s_at11/112+18884061..18891149ATP/GTP binding protein, putative, expressed
LOC_Os02g31960Os.37797.1.A1_at11/112+18884061..18891149ATP/GTP binding protein, putative, expressed
LOC_Os02g31970NANA2+18891680..18896222retrotransposon protein, putative, unclassified
LOC_Os02g31980OsAffx.12311.1.S1_x_at11/112+18896745..18897044proton-dependent oligopeptide transport, putative
LOC_Os02g31980OsAffx.12311.1.S1_at11/112+18896745..18897044proton-dependent oligopeptide transport, putative
LOC_Os02g31990NANA2+18897951..18898370hypothetical protein
LOC_Os02g32000OsAffx.2823.1.S1_at11/112+18899590..18899823hypothetical protein
LOC_Os02g32000OsAffx.2823.1.S1_x_at11/112+18899590..18899823hypothetical protein
LOC_Os02g32009NANA2+18903070..18903450NA
LOC_Os02g32020OsAffx.12312.1.S1_at9/112+18905133..18907062expressed protein
LOC_Os02g32030Os.4705.1.S1_at11/112+18911065..18915987Elongation factor 2, putative, expressed
LOC_Os02g32040NANA2+18917753..18918472AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12311.1.S1_at--792--4651Chr02:18896962..18896986 (25 bp)
GCGTGGCTCGCGACACCGGCCTAAT
LOC_Os02g31980
OsAffx.12311.1.S1_at--100--7551Chr02:18896960..18896984 (25 bp)
GTGGCTCGCGACACCGGCCTAATGG
LOC_Os02g31980
OsAffx.12311.1.S1_at--488--8491Chr02:18896959..18896983 (25 bp)
TGGCTCGCGACACCGGCCTAATGGA
LOC_Os02g31980
OsAffx.12311.1.S1_at--210--9331Chr02:18896955..18896979 (25 bp)
TCGCGACACCGGCCTAATGGACCAG
LOC_Os02g31980
OsAffx.12311.1.S1_at--849--5631Chr02:18896951..18896975 (25 bp)
GACACCGGCCTAATGGACCAGCCGG
LOC_Os02g31980
OsAffx.12311.1.S1_at--619--4431Chr02:18896944..18896968 (25 bp)
GCCTAATGGACCAGCCGGACGTGAC
LOC_Os02g31980
OsAffx.12311.1.S1_at--879--4271Chr02:18896943..18896967 (25 bp)
CCTAATGGACCAGCCGGACGTGACG
LOC_Os02g31980
OsAffx.12311.1.S1_at--122--5931Chr02:18896810..18896834 (25 bp)
GAGCTTCACATCATCGAGCTCGCCG
LOC_Os02g31980
OsAffx.12311.1.S1_at--732--8711Chr02:18896785..18896809 (25 bp)
TGTCCCTGGGCTCGCTGTGTCCCAA
LOC_Os02g31980
OsAffx.12311.1.S1_at--787--3891Chr02:18896780..18896804 (25 bp)
CTGGGCTCGCTGTGTCCCAAGGCAA
LOC_Os02g31980
OsAffx.12311.1.S1_at--446--8651Chr02:18896779..18896803 (25 bp)
TGGGCTCGCTGTGTCCCAAGGCAAT
LOC_Os02g31980
Target Sequence 
GCGTGGCTCGCGACACCGGCCTAATGGACCAGCCGGACGTGACGGTGCCGATGGATGTTTGGTGGCTGGTGCCGCAGCAC
GTGCTCGTCGGCGTTGCCGAGGTGCTCGCCGTGATTGAGCTGAAGGAGTTCTTCTACGACCAGTTGGCCGGCGAGCTTCA
CATCATCGAGCTCGCCGTGTCCCTGGGCTCGCTGTGTCCCAAGGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12311.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis