Browse Element(s) Details


Os.49906.1.S1_at

Description gb:AK119325.1
DB_XREF= gi:37988948
TID=Os.49906.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49906 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-131-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-A11, full insert sequence.
FL= gb:AK119325.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3194010/11Potassium transporter 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31910NANA2+18839683..18845973Potassium transporter 1, putative, expressed
LOC_Os02g31920Os.49414.1.S1_at11/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.47711.1.A1_s_at6/112+18853871..18856948hypothetical protein
LOC_Os02g31920OsAffx.2821.1.S1_at5/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.41918.1.S1_at2/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.41918.1.S1_x_at2/112+18853871..18856948hypothetical protein
LOC_Os02g31930OsAffx.2822.1.S1_at11/112+18862451..18862808hypothetical protein
LOC_Os02g31940Os.49906.1.S1_at10/112+18866419..18872631Potassium transporter 1, putative, expressed
LOC_Os02g31940Os.11262.2.S1_x_at1/112+18866419..18872631Potassium transporter 1, putative, expressed
LOC_Os02g31950OsAffx.12310.1.S1_at11/112+18876585..18876860hypothetical protein
LOC_Os02g31960Os.37797.1.A1_s_at11/112+18884061..18891149ATP/GTP binding protein, putative, expressed
LOC_Os02g31960Os.37797.1.A1_at11/112+18884061..18891149ATP/GTP binding protein, putative, expressed
LOC_Os02g31970NANA2+18891680..18896222retrotransposon protein, putative, unclassified
LOC_Os02g31980OsAffx.12311.1.S1_x_at11/112+18896745..18897044proton-dependent oligopeptide transport, putative
LOC_Os02g31980OsAffx.12311.1.S1_at11/112+18896745..18897044proton-dependent oligopeptide transport, putative

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009674molecular_functionpotassium:sodium symporter activity
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49906.1.S1_at--426--9571Chr02:18866935..18866959 (25 bp)
TCTTCGCCTGCCAATGCGCGGAGGA
LOC_Os02g31940
Os.49906.1.S1_at--826--2531Chr02:18866735..18866759 (25 bp)
AACTACGTCTACACTCGCTTGAGGA
LOC_Os02g31940
Os.49906.1.S1_at--1116--7991Chr02:18866700..18866724 (25 bp)
GGAGGAACACAAGGCGCTGTCCATT
LOC_Os02g31940
Os.49906.1.S1_at--85--6871Chr02:18866625..18866649 (25 bp)
GTTTGGTATAGCTCTTACTCCGAGA
LOC_Os02g31940
Os.49906.1.S1_at--381--9911Chr02:18866610..18866634 (25 bp)
TACTCCGAGATTCTTATCACATAGA
LOC_Os02g31940
Os.49906.1.S1_at--1093--271Chr02:18866590..18866614 (25 bp)
ATAGAGCTAGACATGTACCGAACAC
LOC_Os02g31940
Os.49906.1.S1_at--481--1791NONE
ACCGAACACTCGTAAAATCCTGGAT
NONE
Os.49906.1.S1_at--958--9991Chr02:18866543..18866567 (25 bp)
TAGAGTAGAGCTGTCGGTCCGCTAT
LOC_Os02g31940
Os.49906.1.S1_at--35--4731Chr02:18866534..18866558 (25 bp)
GCTGTCGGTCCGCTATATACTAAAA
LOC_Os02g31940
Os.49906.1.S1_at--535--3731Chr02:18866474..18866498 (25 bp)
CTACTCAGTAGTCAGTTCTGCTCCA
LOC_Os02g31940
Os.49906.1.S1_at--975--6051Chr02:18866437..18866461 (25 bp)
GAGTTGTACCAAATATCCCTTTAGT
LOC_Os02g31940
Target Sequence 
TCTTCGCCTGCCAATGCGCGGAGGACGGCGGCGGCGGCGGCGGTGGCGATGACGACGGCGTGCTGAGGAGGGCGGAGGAG
ATGGCGGCGGAGGAGAAGCGGTTGATCGACGCGGAGGCGGAGCGAGGGTTGGTGTACCTGATGGGGGAGGCGAACGTGGA
GGCGGCGCCGGGGTCGTCGTTGATGAAGCAGATCGTCGTCAACTACGTCTACACTCGCTTGAGGAAAAACCTTAGGGAGG
AACACAAGGCGCTGTCCATTCCTAAGGACCAGCTGCTCAAGGTTGGGATCACTTATGAGATTTAGGGCCTGTTTGGTATA
GCTCTTACTCCGAGATTCTTATCACATAGAGCTAGACATGTACCGAACACTCGTAAAATCCTGGATAATACATAGAGTAG
AGCTGTCGGTCCGCTATATACTAAAAATTACACTATAAAGGATGTAGCATCAATTCTACTTCTACTCAGTAGTCAGTTCT
GCTCCATTCTTGGAGTAGGAGTTGTACCAAATATCCCTTTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49906.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis