Browse Element(s) Details


Os.11825.1.S1_at

Description gb:AK103390.1
DB_XREF= gi:32988599
TID=Os.11825.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11825 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033127K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127K21, full insert sequence.
FL= gb:AK103390.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3187411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31830OsAffx.2820.1.S1_at11/112+18791230..18797143hypothetical protein
LOC_Os02g31840Os.8855.1.S1_at11/112+18799627..18800720expressed protein
LOC_Os02g31850OsAffx.25860.3.S1_at11/112+18807205..18810136transposon protein, putative, unclassified
LOC_Os02g31860Os.14382.1.S1_at8/112+18812264..18815504expressed protein
LOC_Os02g31867Os.15317.1.A1_at11/112+18818690..18820281expressed protein
LOC_Os02g31874Os.11825.1.S1_at11/112+18821158..18825876expressed protein
LOC_Os02g31881Os.52577.1.S1_at1/112+18828815..18830299NA
LOC_Os02g31890OsAffx.24525.1.S1_at11/112+18833325..18836550zinc finger family protein, putative
LOC_Os02g31899Os.35012.1.S1_at6/112+18837161..18837769NA
LOC_Os02g31910NANA2+18839683..18845973Potassium transporter 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11825.1.S1_at--807--3291Chr02:18821389..18821413 (25 bp)
CAAATGTCTTACTTGGATGTTGCCA
LOC_Os02g31874
Os.11825.1.S1_at--915--7991Chr02:18821375..18821399 (25 bp)
GGATGTTGCCAAGCGGATGCCAGTA
LOC_Os02g31874
Os.11825.1.S1_at--869--7971Chr02:18821361..18821385 (25 bp)
GGATGCCAGTAAATTTTTGTTGCTT
LOC_Os02g31874
Os.11825.1.S1_at--509--5111Chr02:18821329..18821353 (25 bp)
GCAACTGTTTATTCCACCCCTATAG
LOC_Os02g31874
Os.11825.1.S1_at--303--91Chr02:18821319..18821343 (25 bp)
ATTCCACCCCTATAGCTTAGCTGTA
LOC_Os02g31874
Os.11825.1.S1_at--293--6891Chr02:18821286..18821310 (25 bp)
GTATAGTTCGATAAAACTTCCCTTG
LOC_Os02g31874
Os.11825.1.S1_at--704--2391Chr02:18821273..18821297 (25 bp)
AAACTTCCCTTGAAACACTGTCCAT
LOC_Os02g31874
Os.11825.1.S1_at--48--1971Chr02:18821257..18821281 (25 bp)
ACTGTCCATACCCAGGTTGTTGTAT
LOC_Os02g31874
Os.11825.1.S1_at--1143--10191Chr02:18821235..18821259 (25 bp)
TATTTCTTCGAAACAGGTGCCTACA
LOC_Os02g31874
Os.11825.1.S1_at--983--5531Chr02:18821226..18821250 (25 bp)
GAAACAGGTGCCTACAATACTTGTA
LOC_Os02g31874
Os.11825.1.S1_at--228--9891Chr02:18821209..18821233 (25 bp)
TACTTGTATAAACACGCCACACATG
LOC_Os02g31874
Target Sequence 
CAAATGTCTTACTTGGATGTTGCCAAGCGGATGCCAGTAAATTTTTGTTGCTTCCGGAAGGCAACTGTTTATTCCACCCC
TATAGCTTAGCTGTAACATGAGTGTATAGTTCGATAAAACTTCCCTTGAAACACTGTCCATACCCAGGTTGTTGTATTTC
TTCGAAACAGGTGCCTACAATACTTGTATAAACACGCCACACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis